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Sample GSM604557 Query DataSets for GSM604557
Status Public on Apr 21, 2011
Title rat parietal cortex, aged , subject 5
Sample type RNA
 
Source name rat
Organism Rattus norvegicus
Characteristics strain: Fischer 344
gender: Male
subject: 5
tissue: frontal cortex
age: 21 to 23 months old (aged)
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Standard Affymetrix
Label Standard Affymetrix
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description 742_100909
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (target intensity = 500) for quality control. gcRMA ( justgcRMA function in bioconductor in R v.2.7.1) was run on all chips simultaneously to generate probe set signal intensities
 
Submission date Oct 04, 2010
Last update date Apr 21, 2011
Contact name Eric M Blalock
E-mail(s) eric.blalock@uky.edu
Phone 859-323-8033
Organization name University of Kentucky
Department Molecular and Biomedical Pharmacology
Lab Blalock
Street address 800 Rose St.
City Lexington
State/province KY
ZIP/Postal code 40475
Country USA
 
Platform ID GPL1355
Series (1)
GSE24515 Deep Sleep and Parietal Cortex Gene Expression Changes are Related to Cognitive Deficits with Age

Data table header descriptions
ID_REF Probe Set
VALUE gcRMA-calculated Signal intensity

Data table
ID_REF VALUE
1367452_at 5727.615
1367453_at 2853.156
1367454_at 1658.891
1367455_at 4159.121
1367456_at 4178.022
1367457_at 2214.349
1367458_at 662.0647
1367459_at 9024.522
1367460_at 5240.396
1367461_at 1619.278
1367462_at 3088.473
1367463_at 1976.546
1367464_at 1729.889
1367465_at 2018.373
1367466_at 2818.251
1367467_at 2884.578
1367468_at 764.7513
1367469_at 7371.039
1367470_at 2472.952
1367471_at 965.3697

Total number of rows: 31099

Table truncated, full table size 607 Kbytes.




Supplementary file Size Download File type/resource
GSM604557.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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