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Sample GSM604794 Query DataSets for GSM604794
Status Public on Mar 30, 2011
Title LEFLUNOMIDE 2
Sample type RNA
 
Source name 24hpf embryos treated with Leflunomide 6.5uM
Organism Danio rerio
Characteristics genotype/variation: Tu
tissue: embryo
treatment group: treated with Leflunomide 6.5uM
Growth protocol Zebrafish of the Tu strain were treated with either DMSO or leflunomide 6.5uM from 50% epiboly until 24hpf
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol (Invitrogen, USA).
Label Cy3
Label protocol Labeling was performed by the Genomics Core at Children's Hospital Boston according to standard Affymetrix protocols
 
Hybridization protocol Hybridization was performed by the Genomics Core at Children's Hospital Boston according to standard Affymetrix protocols
Scan protocol Scanning was performed by the Genomics Core at Children's Hospital Boston according to standard Affymetrix protocols
Description This is a experimental embryo treated with Leflunomide 6.5uM from 50% epiboly until 24hpf
Data processing Raw data (*.cel files) was normalized using GC-RMA followed by per gene and per chip normalization
 
Submission date Oct 05, 2010
Last update date Mar 30, 2011
Contact name Richard Mark White
E-mail(s) whiter@mskcc.org
Phone 646-888-3415
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics
Lab White Lab
Street address 1275 York Avenue MB 424
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL1319
Series (1)
GSE24527 Expression analysis of 24hpf zebrafish embryos treated with Leflunomide 6.5uM

Data table header descriptions
ID_REF
VALUE GCRMA-normalized, averaged gene-level signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.035811424
AFFX-BioB-M_at -0.025191307
AFFX-BioB-3_at 0.07131767
AFFX-BioC-5_at 0.119422436
AFFX-BioC-3_at 0.053720474
AFFX-BioDn-5_at 0.1800642
AFFX-BioDn-3_at 0.1667471
AFFX-CreX-5_at 0.1823225
AFFX-CreX-3_at 0.20533848
AFFX-DapX-5_at 0.73940706
AFFX-DapX-M_at 0.48464203
AFFX-DapX-3_at 0.27183533
AFFX-LysX-5_at 0.43225193
AFFX-LysX-M_at 0.38719082
AFFX-LysX-3_at 0.13113117
AFFX-PheX-5_at 0.410769
AFFX-PheX-M_at 0.5126281
AFFX-PheX-3_at 0.14109135
AFFX-ThrX-5_at 0.4360814
AFFX-ThrX-M_at 0.5237479

Total number of rows: 15617

Table truncated, full table size 430 Kbytes.




Supplementary file Size Download File type/resource
GSM604794.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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