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Sample GSM604795 Query DataSets for GSM604795
Status Public on Mar 30, 2011
Title LEFLUNOMIDE 3
Sample type RNA
 
Source name 24hpf embryos treated with Leflunomide 6.5uM
Organism Danio rerio
Characteristics genotype/variation: Tu
tissue: embryo
treatment group: treated with Leflunomide 6.5uM
Growth protocol Zebrafish of the Tu strain were treated with either DMSO or leflunomide 6.5uM from 50% epiboly until 24hpf
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol (Invitrogen, USA).
Label Cy3
Label protocol Labeling was performed by the Genomics Core at Children's Hospital Boston according to standard Affymetrix protocols
 
Hybridization protocol Hybridization was performed by the Genomics Core at Children's Hospital Boston according to standard Affymetrix protocols
Scan protocol Scanning was performed by the Genomics Core at Children's Hospital Boston according to standard Affymetrix protocols
Description This is a experimental embryo treated with Leflunomide 6.5uM from 50% epiboly until 24hpf
Data processing Raw data (*.cel files) was normalized using GC-RMA followed by per gene and per chip normalization
 
Submission date Oct 05, 2010
Last update date Mar 30, 2011
Contact name Richard Mark White
E-mail(s) whiter@mskcc.org
Phone 646-888-3415
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics
Lab White Lab
Street address 1275 York Avenue MB 424
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL1319
Series (1)
GSE24527 Expression analysis of 24hpf zebrafish embryos treated with Leflunomide 6.5uM

Data table header descriptions
ID_REF
VALUE GCRMA-normalized, averaged gene-level signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 0.16891527
AFFX-BioB-M_at 0.12578773
AFFX-BioB-3_at 0.2052908
AFFX-BioC-5_at 0.08014536
AFFX-BioC-3_at 0.015841484
AFFX-BioDn-5_at 0.016103745
AFFX-BioDn-3_at 0.016129494
AFFX-CreX-5_at 0.025687218
AFFX-CreX-3_at 0.018054962
AFFX-DapX-5_at -1.6478486
AFFX-DapX-M_at -0.37395954
AFFX-DapX-3_at 0.10673046
AFFX-LysX-5_at -0.08529711
AFFX-LysX-M_at 0.069639206
AFFX-LysX-3_at 0.35403538
AFFX-PheX-5_at -0.17040014
AFFX-PheX-M_at -0.10871458
AFFX-PheX-3_at 0.26463413
AFFX-ThrX-5_at -0.40026522
AFFX-ThrX-M_at -0.38054466

Total number of rows: 15617

Table truncated, full table size 430 Kbytes.




Supplementary file Size Download File type/resource
GSM604795.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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