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Sample GSM609170 Query DataSets for GSM609170
Status Public on Oct 16, 2010
Title ko_1
Sample type RNA
Source name E12.5 DRG RNA from Erk1/2CKO(Wnt1) mice
Organism Mus musculus
Characteristics genotype/variation: E12.5 Erk1/2CKO(Wnt1)
cell type: E12.5 dorsal root ganglia (DRG)
Treatment protocol E12.5 DRGs from control and Erk1/2CKO(Wnt1) embryos derived from three independent litters were dissected in PBS supplemented with 10% RNAlater (Qiagen) and frozen on dry ice.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol (Invitrogen) and a Qiagen RNeasy Mini kit per manufacturer’s instructions.
Label Biotin
Label protocol Biotin
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description 4440724029_E
Data processing BeadStudio, quantile normalization
Submission date Oct 15, 2010
Last update date Oct 15, 2010
Contact name Giovanni Coppola
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platform ID GPL6885
Series (1)
GSE24730 Specific functions for ERK/MAPK signaling during PNS development

Data table header descriptions
VALUE Log2 transformed, quantile normalized expresssion levels

Data table
ILMN_2659724 7.066159454
ILMN_2706226 6.717836098
ILMN_1217123 7.142377097
ILMN_2780205 12.86027513
ILMN_2713160 6.841077924
ILMN_2650094 6.627297923
ILMN_2703479 6.641171351
ILMN_2952493 6.676985949
ILMN_2731592 7.740031
ILMN_2729743 8.289919458
ILMN_1252621 8.977610796
ILMN_3162407 7.731542634
ILMN_2692952 7.019492485
ILMN_2910076 6.773437995
ILMN_2709047 9.363189794
ILMN_2718462 8.432988952
ILMN_2882078 9.533857905
ILMN_2882079 7.999335161
ILMN_2771368 6.79452936
ILMN_2724039 6.825355652

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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