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Sample GSM609172 Query DataSets for GSM609172
Status Public on Oct 16, 2010
Title ko_3
Sample type RNA
 
Source name E12.5 DRG RNA from Erk1/2CKO(Wnt1) mice
Organism Mus musculus
Characteristics genotype/variation: E12.5 Erk1/2CKO(Wnt1)
cell type: E12.5 dorsal root ganglia (DRG)
Treatment protocol E12.5 DRGs from control and Erk1/2CKO(Wnt1) embryos derived from three independent litters were dissected in PBS supplemented with 10% RNAlater (Qiagen) and frozen on dry ice.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol (Invitrogen) and a Qiagen RNeasy Mini kit per manufacturer’s instructions.
Label Biotin
Label protocol Biotin
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description 4440724029_G
Data processing BeadStudio, quantile normalization
 
Submission date Oct 15, 2010
Last update date Oct 15, 2010
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE24730 Specific functions for ERK/MAPK signaling during PNS development

Data table header descriptions
ID_REF
VALUE Log2 transformed, quantile normalized expresssion levels

Data table
ID_REF VALUE
ILMN_2659724 7.092376509
ILMN_2706226 6.743331431
ILMN_1217123 7.242219851
ILMN_2780205 12.96448231
ILMN_2713160 6.888821347
ILMN_2650094 6.743776505
ILMN_2703479 6.699530566
ILMN_2952493 6.78768707
ILMN_2731592 7.396251531
ILMN_2729743 8.115593624
ILMN_1252621 8.748705048
ILMN_3162407 7.925269514
ILMN_2692952 7.097379813
ILMN_2910076 6.85486124
ILMN_2709047 9.219674345
ILMN_2718462 8.374954152
ILMN_2882078 9.467059225
ILMN_2882079 7.879632897
ILMN_2771368 6.93237034
ILMN_2724039 6.946755278

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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