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Status |
Public on May 20, 2022 |
Title |
Liver, adjacent nonmalignant, collagenase treated |
Sample type |
SRA |
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Source name |
Liver
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Organism |
Homo sapiens |
Characteristics |
tissue: Liver sample type: Chromatin genotype: WT treatment: Nuclei isolated using collagenase
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Extracted molecule |
genomic DNA |
Extraction protocol |
none provided by the submitter
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Library strategy |
ATAC-seq |
Library source |
genomic single cell |
Library selection |
other |
Instrument model |
Illumina HiSeq 2500 |
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Data processing |
none provided by the submitter Assembly: hg38 Supplementary files format and content: bam Supplementary files format and content: tabix
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Submission date |
May 05, 2022 |
Last update date |
May 20, 2022 |
Contact name |
Alaa Richard Farghli |
E-mail(s) |
af547@cornell.edu
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Phone |
7189098209
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Organization name |
Cornell University
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Department |
Biomedical Sciences
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Lab |
Sethupathy
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Street address |
T7 006D Veterinary Research Tower, Box 17
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City |
Ithaca |
State/province |
NY |
ZIP/Postal code |
14850 |
Country |
USA |
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Platform ID |
GPL16791 |
Series (1) |
GSE202315 |
Chemical, molecular, and single cell analysis reveal chondroitin sulfate proteoglycan aberrancy in fibrolamellar carcinoma |
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Relations |
BioSample |
SAMN28102444 |
SRA |
SRX15165876 |
Supplementary file |
Size |
Download |
File type/resource |
GSM6108287_FLC26_ICBQ_NML_Coll_fragments.bed.gz.tbi.gz |
672.6 Kb |
(ftp)(http) |
TBI |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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