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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 20, 2022 |
| Title |
Liver, primary FLC, collagenase treated |
| Sample type |
SRA |
| |
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| Source name |
Liver
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Liver
sample type: Chromatin
genotype: DP Fusion Detected
treatment: Nuclei isolated using collagenase
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
none provided by the submitter
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| |
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| Library strategy |
ATAC-seq |
| Library source |
genomic single cell |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2500 |
| |
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| Data processing |
none provided by the submitter
Assembly: hg38
Supplementary files format and content: bam
Supplementary files format and content: tabix
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| Submission date |
May 05, 2022 |
| Last update date |
May 20, 2022 |
| Contact name |
Alaa Richard Farghli |
| E-mail(s) |
af547@cornell.edu
|
| Phone |
7189098209
|
| Organization name |
Cornell University
|
| Department |
Biomedical Sciences
|
| Lab |
Sethupathy
|
| Street address |
T7 006D Veterinary Research Tower, Box 17
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| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14850 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE202315 |
Chemical, molecular, and single cell analysis reveal chondroitin sulfate proteoglycan aberrancy in fibrolamellar carcinoma |
|
| Relations |
| BioSample |
SAMN28102442 |
| SRA |
SRX15165878 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6108289_FLC26_YJEE_FLC_Coll_fragments.bed.gz.tbi.gz |
583.8 Kb |
(ftp)(http) |
TBI |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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