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Sample GSM615920 Query DataSets for GSM615920
Status Public on Sep 07, 2011
Title HB00CVX_1/23/08_12:19_PM
Sample type RNA
 
Source name colorectal cancer tissue
Organism Homo sapiens
Characteristics age at diagnosis: 81
gender: female
tumor stage: I
localization: colon
microsatellite instability (msi) status: MSS
tissue type: primary tumor
Extracted molecule total RNA
Extraction protocol Primary tumor: AllPrep DNA/RNA Mini Kit (Qiagen); normal colonic mucosa: Ambion RiboPure Kit (Applied Biosystems)
Label digoxigenein (DIG)-labeled
Label protocol NanoAmp RT-IVT Labeling Kit from Applied Biosystems and DIG-UTP from Roche
 
Hybridization protocol Chemilunimescent Detection Kit from Applied Biosystems
Scan protocol Scanned using AB1700 Chemilunimescent Microarray Analyzer
Description A35_PT
Data processing Image preparation, signal intensity quantification and initial analysis were performed utsing the accompanying software from Applied biosystems (version 1.1.1). Only probes with normalized signals more than three standard deviations greater than the local background levels in at least half of the samples were included. Values with low quality scores were noted as missing and probes affected by array batch variation were identified and removed. The resulting dataset included 17 085 probes.
 
Submission date Nov 01, 2010
Last update date Sep 07, 2011
Contact name Trude Holmeide Ă…gesen
E-mail(s) trude.holmeide.aagesen@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Prevention
Street address Ullernch. 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL2986
Series (1)
GSE25071 Gene expression comparison of colorectal cancer samples from patients diagnosed at a young and elderly age

Data table header descriptions
ID_REF
VALUE normalized values (log2 transformed)

Data table
ID_REF VALUE
100002 16.7933
100036 9.3473
100037 14.9195
100039 12.3261
100058 16.1006
100064 16.1651
100079 16.0236
100089 12.8194
100093 7.9792
100100 13.8368
100111 12.0586
100120 14.7021
100130 14.7945
100137 17.9905
100145 7.9527
100146 14.4252
100172 7.4623
100184 11.7517
100195 14.1804
100214 8.0075

Total number of rows: 17085

Table truncated, full table size 248 Kbytes.




Supplementary file Size Download File type/resource
GSM615920.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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