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Sample GSM615925 Query DataSets for GSM615925
Status Public on Sep 07, 2011
Title HB006YQ_1/30/08_12:48_PM
Sample type RNA
 
Source name colorectal cancer tissue
Organism Homo sapiens
Characteristics age at diagnosis: 53
gender: female
tumor stage: II
localization: rectum
microsatellite instability (msi) status: MSS
tissue type: primary tumor
Extracted molecule total RNA
Extraction protocol Primary tumor: AllPrep DNA/RNA Mini Kit (Qiagen); normal colonic mucosa: Ambion RiboPure Kit (Applied Biosystems)
Label digoxigenein (DIG)-labeled
Label protocol NanoAmp RT-IVT Labeling Kit from Applied Biosystems and DIG-UTP from Roche
 
Hybridization protocol Chemilunimescent Detection Kit from Applied Biosystems
Scan protocol Scanned using AB1700 Chemilunimescent Microarray Analyzer
Description I5_PT
Data processing Image preparation, signal intensity quantification and initial analysis were performed utsing the accompanying software from Applied biosystems (version 1.1.1). Only probes with normalized signals more than three standard deviations greater than the local background levels in at least half of the samples were included. Values with low quality scores were noted as missing and probes affected by array batch variation were identified and removed. The resulting dataset included 17 085 probes.
 
Submission date Nov 01, 2010
Last update date Sep 07, 2011
Contact name Trude Holmeide Ă…gesen
E-mail(s) trude.holmeide.aagesen@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Prevention
Street address Ullernch. 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL2986
Series (1)
GSE25071 Gene expression comparison of colorectal cancer samples from patients diagnosed at a young and elderly age

Data table header descriptions
ID_REF
VALUE normalized values (log2 transformed)

Data table
ID_REF VALUE
100002 17.0524
100036 11.8931
100037 16.3597
100039 13.2169
100058 14.5651
100064 14.5661
100079 17.2252
100089 12.8979
100093 10.6629
100100 14.3855
100111 9.5942
100120 14.3683
100130 15.3193
100137 17.7934
100145 9.9135
100146 13.8474
100172 9.5223
100184 12.0704
100195 13.5221
100214 9.7491

Total number of rows: 17085

Table truncated, full table size 249 Kbytes.




Supplementary file Size Download File type/resource
GSM615925.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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