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Sample GSM615938 Query DataSets for GSM615938
Status Public on Sep 07, 2011
Title HB008FL_2/12/08_2:44_PM
Sample type RNA
 
Source name colorectal cancer tissue
Organism Homo sapiens
Characteristics age at diagnosis: 46
gender: male
tumor stage: III
localization: colon
microsatellite instability (msi) status: MSS
tissue type: primary tumor
Extracted molecule total RNA
Extraction protocol Primary tumor: AllPrep DNA/RNA Mini Kit (Qiagen); normal colonic mucosa: Ambion RiboPure Kit (Applied Biosystems)
Label digoxigenein (DIG)-labeled
Label protocol NanoAmp RT-IVT Labeling Kit from Applied Biosystems and DIG-UTP from Roche
 
Hybridization protocol Chemilunimescent Detection Kit from Applied Biosystems
Scan protocol Scanned using AB1700 Chemilunimescent Microarray Analyzer
Description I16_PT
Data processing Image preparation, signal intensity quantification and initial analysis were performed utsing the accompanying software from Applied biosystems (version 1.1.1). Only probes with normalized signals more than three standard deviations greater than the local background levels in at least half of the samples were included. Values with low quality scores were noted as missing and probes affected by array batch variation were identified and removed. The resulting dataset included 17 085 probes.
 
Submission date Nov 01, 2010
Last update date Sep 07, 2011
Contact name Trude Holmeide Ă…gesen
E-mail(s) trude.holmeide.aagesen@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Prevention
Street address Ullernch. 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL2986
Series (1)
GSE25071 Gene expression comparison of colorectal cancer samples from patients diagnosed at a young and elderly age

Data table header descriptions
ID_REF
VALUE normalized values (log2 transformed)

Data table
ID_REF VALUE
100002 17.3121
100036 12.2236
100037 15.3517
100039 13.5847
100058 15.4634
100064 16.6075
100079 17.2987
100089 13.4954
100093 10.7086
100100 14.3233
100111 7.9740
100120 14.4649
100130 15.5784
100137 17.6306
100145 9.6228
100146 14.0316
100172 9.1993
100184 12.1155
100195 13.9174
100214 9.3497

Total number of rows: 17085

Table truncated, full table size 248 Kbytes.




Supplementary file Size Download File type/resource
GSM615938.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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