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Sample GSM615945 Query DataSets for GSM615945
Status Public on Sep 07, 2011
Title HB008FV_2/27/08_10:52_AM
Sample type RNA
 
Source name colorectal cancer tissue
Organism Homo sapiens
Characteristics age at diagnosis: 28
gender: female
tumor stage: I
localization: colon
microsatellite instability (msi) status: MSS
tissue type: primary tumor
Extracted molecule total RNA
Extraction protocol Primary tumor: AllPrep DNA/RNA Mini Kit (Qiagen); normal colonic mucosa: Ambion RiboPure Kit (Applied Biosystems)
Label digoxigenein (DIG)-labeled
Label protocol NanoAmp RT-IVT Labeling Kit from Applied Biosystems and DIG-UTP from Roche
 
Hybridization protocol Chemilunimescent Detection Kit from Applied Biosystems
Scan protocol Scanned using AB1700 Chemilunimescent Microarray Analyzer
Description I39_PT
Data processing Image preparation, signal intensity quantification and initial analysis were performed utsing the accompanying software from Applied biosystems (version 1.1.1). Only probes with normalized signals more than three standard deviations greater than the local background levels in at least half of the samples were included. Values with low quality scores were noted as missing and probes affected by array batch variation were identified and removed. The resulting dataset included 17 085 probes.
 
Submission date Nov 01, 2010
Last update date Sep 07, 2011
Contact name Trude Holmeide Ă…gesen
E-mail(s) trude.holmeide.aagesen@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Prevention
Street address Ullernch. 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL2986
Series (1)
GSE25071 Gene expression comparison of colorectal cancer samples from patients diagnosed at a young and elderly age

Data table header descriptions
ID_REF
VALUE normalized values (log2 transformed)

Data table
ID_REF VALUE
100002 17.4248
100036 11.3829
100037 15.7018
100039 13.0748
100058 15.7585
100064 17.2655
100079 17.7682
100089 12.5117
100093 10.0053
100100 14.0503
100111 7.1046
100120 13.6424
100130 14.4976
100137 18.3332
100145 10.7276
100146 12.8758
100172 10.5334
100184 12.0942
100195 14.0749
100214 11.4725

Total number of rows: 17085

Table truncated, full table size 248 Kbytes.




Supplementary file Size Download File type/resource
GSM615945.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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