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| Status |
Public on Nov 02, 2006 |
| Title |
2004-11-24-CHC78-Chung-HumanX3P-Rep1 |
| Sample type |
RNA |
| |
|
| Source name |
HNSCC from FFPE block
|
| Organism |
Homo sapiens |
| Characteristics |
HNSCC from FFPE block
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Arcturus Paradise kit
|
| Label |
ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
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| |
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| Description |
HNSCC from FFPE block
|
| Data processing |
quantile normalization of CEL file, GCRMA estimation of probesets, log2 transformation
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| Submission date |
Jun 24, 2005 |
| Last update date |
Nov 02, 2006 |
| Contact name |
Christine H. Chung |
| E-mail(s) |
christine.chung@vanderbilt.edu
|
| Phone |
615-322-4967
|
| Fax |
615343-7602
|
| Organization name |
Vanderbilt University
|
| Department |
Internal Medicine
|
| Lab |
Chung
|
| Street address |
777 PRB
|
| City |
Nashville |
| State/province |
TN |
| ZIP/Postal code |
37232-6307 |
| Country |
USA |
| |
|
| Platform ID |
GPL1352 |
| Series (1) |
| GSE2837 |
Survival Prediction of HNSCC using FFPE samples |
|
| Data table header descriptions |
| ID_REF |
probeset IDs from the human X3P array |
| VALUE |
Quantile normalization of CEL file, GCRMA probeset estimates, log2 transformation |
| Data table |
| ID_REF |
VALUE |
| Hs.145357.0.A1_3p_at |
4.463187611 |
| Hs.6523.1.A4_3p_at |
3.328719648 |
| Hs.184387.0.A1_3p_at |
3.38656324 |
| g13383475_3p_at |
5.380482139 |
| Hs.26045.1.S1_3p_s_at |
3.390491799 |
| Hs.17947.0.A1_3p_at |
2.365639106 |
| Hs2.382100.1.S1_3p_x_at |
7.553421963 |
| Hs.111323.0.S1_3p_at |
3.860011697 |
| Hs.302736.0.S1_3p_at |
2.746295157 |
| Hs.227806.0.S1_3p_a_at |
3.223390704 |
| Hs.301570.0.S1_3p_at |
3.605680697 |
| Hs.136313.0.S1_3p_at |
3.42098407 |
| Hs.198899.0.S1_3p_a_at |
5.708844311 |
| g9961356_3p_at |
3.940472863 |
| Hs.222127.0.A1_3p_at |
3.059249359 |
| Hs.283526.0.A1_3p_at |
3.110802859 |
| Hs.128425.0.S1_3p_a_at |
3.877819391 |
| g10835152_3p_x_at |
3.090056412 |
| Hs.22208.0.S1_3p_at |
7.023859185 |
| g7661625_3p_a_at |
3.821399443 |
Total number of rows: 61358
Table truncated, full table size 1891 Kbytes.
| Supplementary data files not provided |
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