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Sample GSM62225 Query DataSets for GSM62225
Status Public on Nov 02, 2006
Title 2005-03-16-CHC149-Chung-HumanX3P-Rep1
Sample type RNA
 
Source name HNSCC from FFPE block
Organism Homo sapiens
Characteristics HNSCC from FFPE block
Extracted molecule total RNA
Extraction protocol Arcturus Paradise kit
Label ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
 
Description HNSCC from FFPE block
Data processing quantile normalization of CEL file, GCRMA estimation of probesets, log2 transformation
 
Submission date Jun 24, 2005
Last update date Nov 02, 2006
Contact name Christine H. Chung
E-mail(s) christine.chung@vanderbilt.edu
Phone 615-322-4967
Fax 615343-7602
Organization name Vanderbilt University
Department Internal Medicine
Lab Chung
Street address 777 PRB
City Nashville
State/province TN
ZIP/Postal code 37232-6307
Country USA
 
Platform ID GPL1352
Series (1)
GSE2837 Survival Prediction of HNSCC using FFPE samples

Data table header descriptions
ID_REF probeset IDs from the human X3P array
VALUE Quantile normalization of CEL file, GCRMA probeset estimates, log2 transformation

Data table
ID_REF VALUE
Hs.145357.0.A1_3p_at 4.363793341
Hs.6523.1.A4_3p_at 3.067943695
Hs.184387.0.A1_3p_at 2.960982799
g13383475_3p_at 4.812869047
Hs.26045.1.S1_3p_s_at 3.4058976
Hs.17947.0.A1_3p_at 2.257888329
Hs2.382100.1.S1_3p_x_at 8.388491757
Hs.111323.0.S1_3p_at 3.804144717
Hs.302736.0.S1_3p_at 2.713657939
Hs.227806.0.S1_3p_a_at 3.650056852
Hs.301570.0.S1_3p_at 7.279008708
Hs.136313.0.S1_3p_at 3.232362916
Hs.198899.0.S1_3p_a_at 7.601701538
g9961356_3p_at 3.271235545
Hs.222127.0.A1_3p_at 2.516831657
Hs.283526.0.A1_3p_at 2.869731763
Hs.128425.0.S1_3p_a_at 3.910156969
g10835152_3p_x_at 3.156454619
Hs.22208.0.S1_3p_at 7.687631864
g7661625_3p_a_at 3.775623093

Total number of rows: 61358

Table truncated, full table size 1891 Kbytes.




Supplementary data files not provided

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