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| Status |
Public on Jun 30, 2005 |
| Title |
Columbia flowers_stage 1-10 |
| Sample type |
RNA |
| |
|
| Source name |
flowers, stage 1-10
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
flowers, stage 1-10
|
| Treatment protocol |
untreated
|
| Growth protocol |
Plants were grown under long day conditions for 6 weeks
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)
|
| Label |
biotin
|
| Label protocol |
Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.
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| |
|
| Description |
Columbia flowers, stage 1-10, untreated
|
| Data processing |
Affymetrix GeneChip Microarray Suite version 5.0
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| |
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| Submission date |
Jun 28, 2005 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Christine Ellis |
| Organization name |
University of North Carolina at Chapel Hill
|
| Street address |
121 Coker Hall
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-3280 |
| Country |
USA |
| |
|
| Platform ID |
GPL198 |
| Series (1) |
| GSE2848 |
Auxin Response Factor mediated flower gene expression |
|
| Relations |
| Reanalyzed by |
GSE118579 |
| Reanalyzed by |
GSE119083 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
raw signal level |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M) |
| DETECTION P-VALUE |
p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
168 |
P |
0.00762 |
| AFFX-BioB-M_at |
234.3 |
P |
0.000095 |
| AFFX-BioB-3_at |
176.9 |
P |
0.000972 |
| AFFX-BioC-5_at |
508.7 |
P |
0.000147 |
| AFFX-BioC-3_at |
228.3 |
P |
0.00039 |
| AFFX-BioDn-5_at |
395.6 |
P |
0.000052 |
| AFFX-BioDn-3_at |
2058.9 |
P |
0.00006 |
| AFFX-CreX-5_at |
4504.7 |
P |
0.000044 |
| AFFX-CreX-3_at |
6288.5 |
P |
0.000044 |
| AFFX-DapX-5_at |
25.9 |
A |
0.185131 |
| AFFX-DapX-M_at |
15.9 |
A |
0.544587 |
| AFFX-DapX-3_at |
4.6 |
A |
0.932322 |
| AFFX-LysX-5_at |
2.9 |
A |
0.737173 |
| AFFX-LysX-M_at |
4.4 |
A |
0.957038 |
| AFFX-LysX-3_at |
21.1 |
A |
0.262827 |
| AFFX-PheX-5_at |
15.2 |
A |
0.749204 |
| AFFX-PheX-M_at |
1.9 |
A |
0.960339 |
| AFFX-PheX-3_at |
4.4 |
A |
0.891021 |
| AFFX-ThrX-5_at |
3.3 |
A |
0.824672 |
| AFFX-ThrX-M_at |
18.4 |
A |
0.724854 |
Total number of rows: 22810
Table truncated, full table size 590 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM62694.CEL.gz |
3.5 Mb |
(ftp)(http) |
CEL |
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