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GEO accession:
Sample GSM62700
Query DataSets for GSM62700
Status
Public on Jun 30, 2005
Title
arf6/arf6 ARF8/arf8 flowers_stage 13-14
Sample type
RNA
Source name
flowers, stage 13-14
Organism
Arabidopsis thaliana
Characteristics
arf6/arf6 ARF8/arf8 flowers, stage 13-14
Treatment protocol
untreated
Growth protocol
Plants were grown under long day conditions for 6 weeks
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)
Label
biotin
Label protocol
Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.
Description
arf6/arf6 ARF8/arf8 flowers, stage 13-14
Data processing
Affymetrix GeneChip Microarray Suite version 5.0
Submission date
Jun 28, 2005
Last update date
Aug 28, 2018
Contact name
Christine Ellis
Organization name
University of North Carolina at Chapel Hill
Street address
121 Coker Hall
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-3280
Country
USA
Platform ID
GPL198
Series (1)
GSE2848
Auxin Response Factor mediated flower gene expression
Relations
Reanalyzed by
GSE118579
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
raw signal level
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
133.1
P
0.026111
AFFX-BioB-M_at
111.5
P
0.002023
AFFX-BioB-3_at
102.4
P
0.01667
AFFX-BioC-5_at
426.8
P
0.000258
AFFX-BioC-3_at
239.7
P
0.000297
AFFX-BioDn-5_at
275.8
P
0.00007
AFFX-BioDn-3_at
1489.8
P
0.000052
AFFX-CreX-5_at
2327.2
P
0.000044
AFFX-CreX-3_at
4148.2
P
0.000044
AFFX-DapX-5_at
2.2
A
0.860538
AFFX-DapX-M_at
47.3
A
0.250796
AFFX-DapX-3_at
3.3
A
0.957038
AFFX-LysX-5_at
3.6
A
0.868639
AFFX-LysX-M_at
11.4
A
0.9273
AFFX-LysX-3_at
49.5
P
0.042962
AFFX-PheX-5_at
5.2
A
0.941556
AFFX-PheX-M_at
4.7
A
0.852061
AFFX-PheX-3_at
31.1
A
0.574038
AFFX-ThrX-5_at
23.3
A
0.804734
AFFX-ThrX-M_at
10.9
A
0.794268
Total number of rows:
22810
Table truncated, full table size
590 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62700.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
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