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| Status |
Public on Jan 01, 2006 |
| Title |
C. elegans_2_2 |
| Sample type |
RNA |
| |
|
| Source name |
egl-15::gfp; pHS::hlh-8 pHS::hlh-2 pRF4
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
heat shock treatment
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
|
| Label |
biotin
|
| Label protocol |
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
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| |
|
| Hybridization protocol |
standard Affymetrix procedures
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| Scan protocol |
standard Affymetrix procedures
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| Description |
pRF4: is a transformation marker.
|
| Data processing |
Affymetrix Microarray Suite version 5.0
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| Submission date |
Jul 01, 2005 |
| Last update date |
Jul 01, 2005 |
| Contact name |
WeiPing Chen |
| E-mail(s) |
weipingChen@niddk.nih.gov
|
| Phone |
301-496-0175
|
| Organization name |
NIDDK/NIH
|
| Department |
GCL
|
| Lab |
Genomics Core Lab
|
| Street address |
Bldg 8, Room 1A11, NIDDK/NIH
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL200 |
| Series (1) |
| GSE2862 |
Twist Heat Shock in C. elegans |
|
| Data table header descriptions |
| ID_REF |
prob set id |
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'change p-value', |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
271.7 |
P |
0.328679 |
| AFFX-BioB-M_at |
348.3 |
P |
0.009673 |
| AFFX-BioB-3_at |
130.5 |
P |
0.169958 |
| AFFX-BioC-5_at |
521.3 |
P |
0.121123 |
| AFFX-BioC-3_at |
452.6 |
P |
0.002189 |
| AFFX-BioDn-5_at |
422.6 |
P |
0.000004 |
| AFFX-BioDn-3_at |
2842.3 |
P |
0.000025 |
| AFFX-CreX-5_at |
6732.9 |
P |
0.000001 |
| AFFX-CreX-3_at |
7465.1 |
P |
0 |
| AFFX-DapX-5_at |
32.8 |
M |
0.5 |
| AFFX-DapX-M_at |
27.6 |
A |
0.605968 |
| AFFX-DapX-3_at |
14.7 |
A |
0.300066 |
| AFFX-LysX-5_at |
1.2 |
A |
0.812494 |
| AFFX-LysX-M_at |
11.6 |
A |
0.5 |
| AFFX-LysX-3_at |
6.1 |
A |
0.5 |
| AFFX-PheX-5_at |
3.8 |
A |
0.840048 |
| AFFX-PheX-M_at |
4.5 |
A |
0.5 |
| AFFX-PheX-3_at |
9.3 |
A |
0.740595 |
| AFFX-ThrX-5_at |
8.1 |
A |
0.5 |
| AFFX-ThrX-M_at |
31 |
A |
0.948067 |
Total number of rows: 22625
Table truncated, full table size 542 Kbytes.
| Supplementary data files not provided |
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