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Status |
Public on Jan 01, 2006 |
Title |
C. elegans_2_2 (2) |
Sample type |
RNA |
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Source name |
egl-15::gfp; pHS::hlh-8 pHS::hlh-2 pRF4
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Organism |
Caenorhabditis elegans |
Characteristics |
heat shock treatment
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
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Label |
biotin
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Label protocol |
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
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Hybridization protocol |
standard Affymetrix procedures
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Scan protocol |
standard Affymetrix procedures
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Description |
pRF4: is a transformation marker.
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Data processing |
Affymetrix Microarray Suite version 5.0
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Submission date |
Jul 01, 2005 |
Last update date |
Jul 01, 2005 |
Contact name |
WeiPing Chen |
E-mail(s) |
weipingChen@niddk.nih.gov
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Phone |
301-496-0175
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Organization name |
NIDDK/NIH
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Department |
GCL
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Lab |
Genomics Core Lab
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Street address |
Bldg 8, Room 1A11, NIDDK/NIH
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
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Platform ID |
GPL200 |
Series (1) |
GSE2862 |
Twist Heat Shock in C. elegans |
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Data table header descriptions |
ID_REF |
prob set id |
VALUE |
MAS5-calculated Signal intensity |
ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
DETECTION P-VALUE |
'change p-value', |
Data table |
ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
AFFX-BioB-5_at |
292.5 |
P |
0.085186 |
AFFX-BioB-M_at |
293.8 |
P |
0.118437 |
AFFX-BioB-3_at |
152.3 |
P |
0.388869 |
AFFX-BioC-5_at |
505.8 |
P |
0.004049 |
AFFX-BioC-3_at |
362.1 |
P |
0.001192 |
AFFX-BioDn-5_at |
407.5 |
P |
0.00318 |
AFFX-BioDn-3_at |
2992.8 |
P |
0.5 |
AFFX-CreX-5_at |
6244.4 |
P |
0.00001 |
AFFX-CreX-3_at |
7030.6 |
P |
0.000003 |
AFFX-DapX-5_at |
21.5 |
A |
0.5 |
AFFX-DapX-M_at |
16.1 |
A |
0.5 |
AFFX-DapX-3_at |
20.3 |
A |
0.5 |
AFFX-LysX-5_at |
1.7 |
A |
0.510723 |
AFFX-LysX-M_at |
85.6 |
A |
0.425368 |
AFFX-LysX-3_at |
17.4 |
A |
0.99917 |
AFFX-PheX-5_at |
5.5 |
A |
0.5 |
AFFX-PheX-M_at |
33 |
A |
0.774189 |
AFFX-PheX-3_at |
7.8 |
A |
0.505362 |
AFFX-ThrX-5_at |
7.7 |
A |
0.5 |
AFFX-ThrX-M_at |
37.9 |
A |
0.5 |
Total number of rows: 22625
Table truncated, full table size 548 Kbytes.
Supplementary data files not provided |
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