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Sample GSM630722 Query DataSets for GSM630722
Status Public on Jan 31, 2016
Title day 1 differentiated oligodendrocytes (rep 3)
Sample type RNA
 
Source name day 1 differentiated oligodendrocytes (rep 3)
Organism Rattus norvegicus
Characteristics sample type: Sprague-Dawley neonatal rat isolated oligodendrocytes
strain: Sprague-Dawley
cell type: oligodendrocytes
differentiation state: day 1 differentiated oligodendrocyte
Treatment protocol Oligodendrocyte progenitors were treated for 24 or 48 hrs with PD169316
Growth protocol Oligodendrocytes were isolated according to the protocol of McCarthy & De Vellis (PMID: 6248568)
Extracted molecule total RNA
Extraction protocol Extracted using the Qiagen Rneasy RNA extraction kit
Label Cy3
Label protocol Cy3 - according to Illumina manufacturer instructions CATALOG # BD-901-1002
 
Hybridization protocol according to Illumina manufacturer instructions
Scan protocol according to Illumina manufacturer instructions
Description SRD222
Data processing FlexArray Software (GenomeQuebec)
 
Submission date Nov 29, 2010
Last update date Jan 31, 2016
Contact name Guillermina Almazan
E-mail(s) guillermina.almazan@mcgill.ca
Phone 514-398-6222
Organization name McGill University
Department Pharmacology and Therapeutics
Street address 3655 Prom. Sir William Osler
City Montreal
State/province Quebec
ZIP/Postal code H3G 1Y6
Country Canada
 
Platform ID GPL6101
Series (1)
GSE25670 p38 regulated genes in rat myelinating glia

Data table header descriptions
ID_REF
VALUE average signal
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1369537 179.6668 39 7.789082 0
ILMN_1358051 154.9226 36 10.57912 0.004914005
ILMN_1361746 124.9403 50 4.664086 0.2628992
ILMN_1351370 133.6389 33 4.744189 0.1203931
ILMN_1357910 287.5504 39 11.3847 0
ILMN_1352975 459.8476 34 16.35653 0
ILMN_1368384 123.6851 38 5.649731 0.2936118
ILMN_1355285 139.2097 48 6.358706 0.06756756
ILMN_1376898 151.7985 49 7.022944 0.00982801
ILMN_1368325 656.383 46 26.33613 0
ILMN_1353563 1591.602 42 67.1828 0
ILMN_1348794 97.36517 33 7.736463 0.9398034
ILMN_1364273 282.5883 44 10.7208 0
ILMN_1369433 157.0897 48 6.555821 0
ILMN_1349007 421.7847 42 18.82371 0
ILMN_1374156 141.3845 37 6.132043 0.05282555
ILMN_1360232 1513.535 50 38.80318 0
ILMN_1355155 6705.087 40 221.509 0
ILMN_1362563 150.6748 44 5.661305 0.01105651
ILMN_1355815 129.8697 35 7.13677 0.1658477

Total number of rows: 22523

Table truncated, full table size 891 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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