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Sample GSM630726 Query DataSets for GSM630726
Status Public on Jan 31, 2016
Title day 2 differentiated oligodendrocytes (rep 1)
Sample type RNA
 
Source name day 2 differentiated oligodendrocytes (rep 1)
Organism Rattus norvegicus
Characteristics sample type: Sprague-Dawley neonatal rat isolated oligodendrocytes
strain: Sprague-Dawley
cell type: oligodendrocytes
differentiation state: day 2 differentiated oligodendrocyte
Treatment protocol Oligodendrocyte progenitors were treated for 24 or 48 hrs with PD169316
Growth protocol Oligodendrocytes were isolated according to the protocol of McCarthy & De Vellis (PMID: 6248568)
Extracted molecule total RNA
Extraction protocol Extracted using the Qiagen Rneasy RNA extraction kit
Label Cy3
Label protocol Cy3 - according to Illumina manufacturer instructions CATALOG # BD-901-1002
 
Hybridization protocol according to Illumina manufacturer instructions
Scan protocol according to Illumina manufacturer instructions
Description SRD226
Data processing FlexArray Software (GenomeQuebec)
 
Submission date Nov 29, 2010
Last update date Jan 31, 2016
Contact name Guillermina Almazan
E-mail(s) guillermina.almazan@mcgill.ca
Phone 514-398-6222
Organization name McGill University
Department Pharmacology and Therapeutics
Street address 3655 Prom. Sir William Osler
City Montreal
State/province Quebec
ZIP/Postal code H3G 1Y6
Country Canada
 
Platform ID GPL6101
Series (1)
GSE25670 p38 regulated genes in rat myelinating glia

Data table header descriptions
ID_REF
VALUE average signal
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1369537 147.8872 38 6.023841 0
ILMN_1358051 127.8886 35 6.536075 0.04192355
ILMN_1361746 110.9286 46 5.860693 0.2909988
ILMN_1351370 96.52654 41 3.487339 0.7706535
ILMN_1357910 274.5046 34 12.10548 0
ILMN_1352975 371.5631 54 12.71719 0
ILMN_1368384 119.6454 36 6.017865 0.1208385
ILMN_1355285 127.1251 56 4.75052 0.04438964
ILMN_1376898 114.8775 41 3.590488 0.2022195
ILMN_1368325 611.6618 37 24.4393 0
ILMN_1353563 825.3603 33 23.41231 0
ILMN_1348794 72.30671 28 3.681851 1
ILMN_1364273 267.9251 39 11.12592 0
ILMN_1369433 155.6952 41 7.248782 0
ILMN_1349007 321.9961 42 12.74984 0
ILMN_1374156 108.8045 29 4.505852 0.3403206
ILMN_1360232 1174.075 38 40.60187 0
ILMN_1355155 6870.958 56 183.5418 0
ILMN_1362563 138.5062 46 5.760575 0
ILMN_1355815 131.4686 42 5.658969 0.02342787

Total number of rows: 22523

Table truncated, full table size 888 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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