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Sample GSM631428 Query DataSets for GSM631428
Status Public on Jan 03, 2011
Title BMDM stimulated with cmB16F1 and dexa+IL4, rep3
Sample type RNA
 
Source name BMDM stimulated with cmB16F1 and dexa+IL4
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: bone marrow cells after a total of 7 days cultivation in vitro
stimulation: cmB16+Dexa+IL4
Treatment protocol At day 4 the culture medium was replaced by stimulation medium as indicated and cells were cultured for 3 more days.
Growth protocol Bone marrow cells were isolated from the tibias and femurs of C57BL/6 mice. M-CSF at a concentration of 30 ng/ml was added to the culture medium [DMEM, 10% FCS, and penicillin/streptomycin].
Extracted molecule total RNA
Extraction protocol Total RNA extraction was carried out with a RNeasy RNA-extraction Kit (Qiagen) according to the manufacturers protocols
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Hybridization (16h x 45°C) was processed according to the standard Affymetrix protocol.
Scan protocol Affymetrix GeneArray Scanner3000
Description mouse bone marrow cells after a total of 7 days cultivation in vitro stimulated with cmB16F1 and dexa+IL4, rep3
Data processing The data were analyzed with a commercial software called JMP Genomics, version 3.2, from SAS. A custom CDF (Mouse4302_Mm_UG, Brainarray Version 9) was used to annotate the arrays. The Raw fluorescence intensity values were normalized applying quantile normalization.
 
Submission date Nov 30, 2010
Last update date Jan 03, 2011
Contact name Carsten Sticht
Organization name University Heidelberg
Department ZMF
Street address Theodor-Kutzer-Ufer
City Mannheim
ZIP/Postal code 68169
Country Germany
 
Platform ID GPL6526
Series (1)
GSE25707 Synergistic activation by p38MAPK and glucocorticoid signaling mediates induction of M2-like tumor-associated macrophages expressing the novel CD20 homolog MS4A8A

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
AFFX-18SRNAMur/X00686_3_at 10.4469601
AFFX-18SRNAMur/X00686_5_at 9.46720062
AFFX-18SRNAMur/X00686_M_at 9.86139701
AFFX-b-ActinMur/M12481_3_at 13.7628224
AFFX-b-ActinMur/M12481_5_at 12.66053
AFFX-b-ActinMur/M12481_M_at 12.8507189
AFFX-BioB-3_at 8.35728782
AFFX-BioB-5_at 8.05174828
AFFX-BioB-M_at 8.52057208
AFFX-BioC-3_at 9.53091383
AFFX-BioC-5_at 9.24598841
AFFX-BioDn-3_at 11.3086308
AFFX-BioDn-5_at 10.1319522
AFFX-CreX-3_at 12.5563344
AFFX-CreX-5_at 12.2977203
AFFX-DapX-3_at 6.45739448
AFFX-DapX-5_at 6.32200443
AFFX-DapX-M_at 6.49949551
AFFX-GapdhMur/M32599_3_at 12.7212785
AFFX-GapdhMur/M32599_5_at 12.2050723

Total number of rows: 17931

Table truncated, full table size 410 Kbytes.




Supplementary file Size Download File type/resource
GSM631428.CEL.gz 5.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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