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Sample GSM632282 Query DataSets for GSM632282
Status Public on Oct 26, 2014
Title IRAK4 P4_R6
Sample type RNA
 
Source name whole blood from IRAK4-/- patient
Organism Homo sapiens
Characteristics gender: F
race: White
illness: IRAK4-/- patient
geographic: UK
age at enrollment: 14
cell population: Whole blood
in vitro stimulation condition: R6
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set2
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 1.550652 0.474026
ILMN_2055271 13.28296 0.03766234
ILMN_1736007 8.533703 0.1168831
ILMN_2383229 -11.03625 0.8883117
ILMN_1806310 -2.973161 0.6532468
ILMN_1779670 2.034751 0.4493507
ILMN_1653355 13.83455 0.03636364
ILMN_1717783 -9.546878 0.851948
ILMN_1705025 1.336986 0.4883117
ILMN_1814316 1.536243 0.4753247
ILMN_2359168 -8.019445 0.8103896
ILMN_1731507 -9.130562 0.8441558
ILMN_1787689 3.752584 0.3415585
ILMN_3241953 20.28841 0.003896104
ILMN_1745607 -7.436841 0.8012987
ILMN_2136495 -14.48979 0.9649351
ILMN_1668111 -1.855329 0.6168831
ILMN_2295559 6.018429 0.2246753
ILMN_1735045 -5.993269 0.7597402
ILMN_1680754 4.360307 0.3064935

Total number of rows: 47231

Table truncated, full table size 1393 Kbytes.




Supplementary file Size Download File type/resource
GSM632282_5385421031_D_Bg.txt.gz 555.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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