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Sample GSM632286 Query DataSets for GSM632286
Status Public on Oct 26, 2014
Title control 2_3M13
Sample type RNA
 
Source name whole blood from healthy control
Organism Homo sapiens
Characteristics gender: F
race: White
illness: healthy control
geographic: France
age at enrollment: 40
cell population: Whole blood
in vitro stimulation condition: 3M13
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set2
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 13.3163 0.06103896
ILMN_2055271 12.18413 0.08051948
ILMN_1736007 4.636169 0.2974026
ILMN_2383229 -2.445544 0.6311688
ILMN_1806310 -2.37124 0.6246753
ILMN_1779670 1.537531 0.4285714
ILMN_1653355 26.776 0.002597403
ILMN_1717783 -11.95242 0.9
ILMN_1705025 0.7213051 0.4792208
ILMN_1814316 6.988567 0.2064935
ILMN_2359168 -11.46893 0.8857143
ILMN_1731507 -16.03596 0.9727273
ILMN_1787689 4.632416 0.2974026
ILMN_3241953 20.50894 0.01558442
ILMN_1745607 -9.996084 0.8402597
ILMN_2136495 -17.76813 0.9896104
ILMN_1668111 -6.683909 0.7766234
ILMN_2295559 -4.652855 0.7116883
ILMN_1735045 -10.77732 0.861039
ILMN_1680754 11.73678 0.08441558

Total number of rows: 47231

Table truncated, full table size 1377 Kbytes.




Supplementary file Size Download File type/resource
GSM632286_5385421031_I_Bg.txt.gz 553.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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