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Sample GSM63232 Query DataSets for GSM63232
Status Public on Jul 13, 2005
Title Uterus_day 5 of pregnancy_implantation site
Sample type SAGE
Anchor NlaIII
Tag Count 53214
Tag Length 10
 
Source name Uterus, day 5 of pregnancy, implantation site
Organism Mus musculus
Characteristics Strain: Kunming White outbred strain
Gender: female
Age: Sexally mature
Tissue: Uterus
Extracted molecule total RNA
 
Description Female mice on day 5 of pregnancy (day 1=day of vaginal plug) were injected with 0.1 ml of 1% Chicago blue (i.v.) and sacrificed 5 min later to collect implantation sites and inter-implantation sites, respectively. SAGE libraries were constructed from 20 microgram of total RNA from implantation sites or interimplantation sites utilizing the I-SAGE kit (Invitrogen, Gaithersburg, MD) according to the manufacturer’s recommendation.
 
Submission date Jul 08, 2005
Last update date Nov 19, 2008
Contact name Zeng-Ming Yang
E-mail(s) zmyang@stu.edu.cn
Phone 0754-82902011
Organization name Shantou University
Department Biology
Lab Reproductive Biology
Street address 263 Daxue Road
City Shantou
ZIP/Postal code 515063
Country China
 
Platform ID GPL11
Series (1)
GSE2892 Global transcriptome analysis of mouse uterus during embryo implantation by SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
GTGGCTCACA 907 17044.39
TGGGTTGTCT 704 13229.60
ATAATACATA 660 12402.75
AAAAAAAAAA 514 9659.11
GTGAAACTAA 467 8775.89
CAATAAAACT 461 8663.13
GGCTTTGGTC 447 8400.05
ATACTGACAT 353 6633.59
TGGATCAGTC 343 6445.67
TGGTGACAAA 296 5562.45
TGCTACCCTT 294 5524.86
CTAGTCTTTG 286 5374.53
GCGGCGGATG 282 5299.36
GCCCGGGAAT 273 5130.23
TAAAGAGGCC 258 4848.35
GGCAAGCCCC 255 4791.97
TGACCCCGGG 253 4754.39
GAATAATAAA 239 4491.30
GGATTTGGCT 231 4340.96
CAAACTCTCA 225 4228.21

Total number of rows: 16733

Table truncated, full table size 312 Kbytes.




Supplementary data files not provided

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