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Sample GSM632331 Query DataSets for GSM632331
Status Public on Oct 26, 2014
Title MYD88 P4_No stimulation
Sample type RNA
 
Source name whole blood from MYD88-/- patient
Organism Homo sapiens
Characteristics gender: F
race: White
illness: MYD88-/- patient
geographic: Turkish
age at enrollment: 5
cell population: Whole blood
in vitro stimulation condition: No stimulation
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set2
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 1.053983 0.4649351
ILMN_2055271 27.48051 0.005194805
ILMN_1736007 7.069158 0.2220779
ILMN_2383229 4.034941 0.3415585
ILMN_1806310 0.9153879 0.4688312
ILMN_1779670 -9.391693 0.8142857
ILMN_1653355 15.96057 0.03896104
ILMN_1717783 -6.11848 0.7467533
ILMN_1705025 2.901365 0.3896104
ILMN_1814316 3.799816 0.3506494
ILMN_2359168 -11.27247 0.848052
ILMN_1731507 -12.14054 0.8688312
ILMN_1787689 -3.389115 0.6610389
ILMN_3241953 79.19249 0
ILMN_1745607 -7.029164 0.7623377
ILMN_2136495 -14.89634 0.938961
ILMN_1668111 0.6330106 0.4883117
ILMN_2295559 11.50582 0.09220779
ILMN_1735045 -1.551858 0.5987013
ILMN_1680754 8.163873 0.174026

Total number of rows: 47231

Table truncated, full table size 1374 Kbytes.




Supplementary file Size Download File type/resource
GSM632331_5385421039_A_Bg.txt.gz 552.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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