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Sample GSM632353 Query DataSets for GSM632353
Status Public on Oct 26, 2014
Title IRAK4 P3_R11470
Sample type RNA
 
Source name whole blood from IRAK4-/- patient
Organism Homo sapiens
Characteristics gender: M
race: White
illness: IRAK4-/- patient
geographic: Portugal
age at enrollment: 14
cell population: Whole blood
in vitro stimulation condition: R11470
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set2
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 8.273274 0.1428571
ILMN_2055271 25.22498 0.002597403
ILMN_1736007 0.1840335 0.5025974
ILMN_2383229 1.193072 0.438961
ILMN_1806310 3.860314 0.3168831
ILMN_1779670 -6.705671 0.7896104
ILMN_1653355 32.93493 0
ILMN_1717783 -14.44329 0.9662338
ILMN_1705025 2.644925 0.3727273
ILMN_1814316 3.648676 0.3272727
ILMN_2359168 -13.6399 0.9571428
ILMN_1731507 -3.561174 0.674026
ILMN_1787689 0.03754265 0.5064935
ILMN_3241953 26.74316 0.001298701
ILMN_1745607 -3.070277 0.6571429
ILMN_2136495 -15.12018 0.974026
ILMN_1668111 8.669027 0.1350649
ILMN_2295559 -4.131557 0.6961039
ILMN_1735045 -0.8744494 0.5623376
ILMN_1680754 18.33295 0.01298701

Total number of rows: 47231

Table truncated, full table size 1386 Kbytes.




Supplementary file Size Download File type/resource
GSM632353_5385421052_A_Bg.txt.gz 554.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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