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Sample GSM632383 Query DataSets for GSM632383
Status Public on Oct 26, 2014
Title control 1_PAM2
Sample type RNA
 
Source name whole blood from healthy control
Organism Homo sapiens
Characteristics gender: M
race: White
illness: healthy control
geographic: Portugal
age at enrollment: 38
cell population: Whole blood
in vitro stimulation condition: PAM2
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set2
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 6.591259 0.1805195
ILMN_2055271 11.20871 0.05714286
ILMN_1736007 6.49514 0.1818182
ILMN_2383229 3.695564 0.3
ILMN_1806310 0.8668872 0.4584416
ILMN_1779670 -1.66872 0.6064935
ILMN_1653355 5.457886 0.2168831
ILMN_1717783 -12.46269 0.9545454
ILMN_1705025 1.150542 0.438961
ILMN_1814316 7.246542 0.1675325
ILMN_2359168 -2.625022 0.6571429
ILMN_1731507 -8.506188 0.8558441
ILMN_1787689 -6.503161 0.8025974
ILMN_3241953 13.78046 0.02597403
ILMN_1745607 -12.60892 0.9558442
ILMN_2136495 -13.27144 0.9675325
ILMN_1668111 -2.361365 0.6441559
ILMN_2295559 -0.625841 0.548052
ILMN_1735045 -6.48453 0.8012987
ILMN_1680754 9.791036 0.08051948

Total number of rows: 47231

Table truncated, full table size 1397 Kbytes.




Supplementary file Size Download File type/resource
GSM632383_5385421055_D_Bg.txt.gz 556.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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