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Sample GSM632454 Query DataSets for GSM632454
Status Public on Oct 26, 2014
Title control 10_Flagellin
Sample type RNA
 
Source name whole blood from healthy control
Organism Homo sapiens
Characteristics gender: M
race: White
illness: healthy control
geographic: Turkish
age at enrollment: 33
cell population: Whole blood
in vitro stimulation condition: Flagellin
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set2
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 7.019405 0.2246753
ILMN_2055271 21.86219 0.01298701
ILMN_1736007 5.583719 0.2805195
ILMN_2383229 -2.134597 0.6246753
ILMN_1806310 11.97135 0.0948052
ILMN_1779670 -8.113954 0.7792208
ILMN_1653355 4.686311 0.3233766
ILMN_1717783 -13.75062 0.9025974
ILMN_1705025 -1.763651 0.6090909
ILMN_1814316 6.105924 0.2649351
ILMN_2359168 -5.970782 0.7428572
ILMN_1731507 -13.90954 0.9051948
ILMN_1787689 -0.5866823 0.5701299
ILMN_3241953 39.69224 0
ILMN_1745607 -13.57579 0.8974026
ILMN_2136495 -8.807284 0.7909091
ILMN_1668111 8.419584 0.1844156
ILMN_2295559 1.996779 0.4363636
ILMN_1735045 -8.328746 0.7805195
ILMN_1680754 -1.328878 0.5909091

Total number of rows: 47231

Table truncated, full table size 1374 Kbytes.




Supplementary file Size Download File type/resource
GSM632454_5388454009_E_Bg.txt.gz 552.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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