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Sample GSM632588 Query DataSets for GSM632588
Status Public on Oct 26, 2014
Title MYD88 P2_IL18
Sample type RNA
 
Source name whole blood from MYD88-/- patient
Organism Homo sapiens
Characteristics gender: M
race: White
illness: MYD88-/- patient
geographic: Portugal
age at enrollment: 11
cell population: Whole blood
in vitro stimulation condition: IL18
in vitro stimulation incubation time: 2h
in vitro stimulation blood volume per condition: 1 ml
Extracted molecule total RNA
Extraction protocol RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridization to HumanHT-12 v4 Expression BeadChip
Scan protocol SentrixScanVersion 2.3.0.13
Description Set1
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Dec 01, 2010
Last update date Oct 26, 2014
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL10558
Series (1)
GSE25742 Genome-wide profiling of whole blood from patients with defects in Toll-like receptors (TLRs) and IL-1Rs (the TIR pathway) signaling

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
DETECTION P-VALUE Illumina detection call

Data table
ID_REF VALUE DETECTION P-VALUE
ILMN_1762337 8.450616 0.287013
ILMN_2055271 8.905849 0.2779221
ILMN_1736007 6.005863 0.3636364
ILMN_2383229 -0.8559498 0.574026
ILMN_1806310 8.77474 0.2818182
ILMN_1779670 -3.908604 0.6610389
ILMN_1653355 13.712 0.1194805
ILMN_1717783 -24.02977 0.9714286
ILMN_1705025 8.728383 0.2818182
ILMN_1814316 -12.29684 0.7857143
ILMN_2359168 -14.53173 0.8272727
ILMN_1731507 -25.368 0.9831169
ILMN_1787689 -4.833061 0.6792208
ILMN_3241953 3.759791 0.4402598
ILMN_1745607 25.66017 0.01038961
ILMN_2136495 -13.27836 0.8077922
ILMN_1668111 15.95312 0.08181818
ILMN_2295559 1.144074 0.5233766
ILMN_1735045 -14.63718 0.8298701
ILMN_1680754 -9.801566 0.7428572

Total number of rows: 47231

Table truncated, full table size 1387 Kbytes.




Supplementary file Size Download File type/resource
GSM632588_5417622005_F_Bg.txt.gz 555.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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