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Sample GSM635248 Query DataSets for GSM635248
Status Public on Jan 01, 2012
Title proestrus stage rep1
Sample type RNA
 
Source name mouse oviduct
Organism Mus musculus
Characteristics strain: ICR
age: 6 weeks
tissue: oviduct
developmental stage: proestrus stage
Extracted molecule total RNA
Extraction protocol RNA was extracted, clean-up and DNase I treatment with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Dec 06, 2010
Last update date Jan 01, 2012
Contact name Chung-Hao Lu
E-mail(s) d95642001@ntu.edu.tw
Phone 886-2-28094661-2357
Organization name Mackay Memorial Hospital
Department Department of Medical Research
Lab Reproduction
Street address 92, Sec. 2, Zhongshan N. Rd
City Taipei
State/province Taipei
ZIP/Postal code 10449
Country Taiwan
 
Platform ID GPL6885
Series (1)
GSE25875 Gene expression profiles of the mouse oviduct during the estrous cycle

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 -10.61017 0.6754386
ILMN_3122480 -6.173247 0.5488722
ILMN_2599935 286.253 0
ILMN_2675543 -5.769489 0.5288221
ILMN_2686883 68.96661 0.003759399
ILMN_2751818 -3.907988 0.4736842
ILMN_2728634 138.8073 0
ILMN_3040515 -10.94839 0.6829574
ILMN_2711608 155.2212 0
ILMN_1232875 -6.043067 0.5463659
ILMN_1258507 -1.292694 0.406015
ILMN_2746142 -20.30963 0.9461153
ILMN_1252690 41.37085 0.01754386
ILMN_2655499 -13.60518 0.7819549
ILMN_1252870 19.25617 0.09273183
ILMN_1248179 -13.67378 0.783208
ILMN_2649955 124.1406 0
ILMN_2628708 8.406201 0.197995
ILMN_3024781 -6.358318 0.5526316
ILMN_2705628 3.514484 0.2869674

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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