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Sample GSM635250 Query DataSets for GSM635250
Status Public on Jan 01, 2012
Title metestrus stage rep1
Sample type RNA
 
Source name mouse oviduct
Organism Mus musculus
Characteristics strain: ICR
age: 6 weeks
tissue: oviduct
developmental stage: metestrus stage
Extracted molecule total RNA
Extraction protocol RNA was extracted, clean-up and DNase I treatment with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Dec 06, 2010
Last update date Jan 01, 2012
Contact name Chung-Hao Lu
E-mail(s) d95642001@ntu.edu.tw
Phone 886-2-28094661-2357
Organization name Mackay Memorial Hospital
Department Department of Medical Research
Lab Reproduction
Street address 92, Sec. 2, Zhongshan N. Rd
City Taipei
State/province Taipei
ZIP/Postal code 10449
Country Taiwan
 
Platform ID GPL6885
Series (1)
GSE25875 Gene expression profiles of the mouse oviduct during the estrous cycle

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 1.179342 0.3107769
ILMN_3122480 -6.953965 0.5538847
ILMN_2599935 269.6039 0
ILMN_2675543 5.965468 0.2105263
ILMN_2686883 49.3332 0.002506266
ILMN_2751818 -10.82665 0.7030075
ILMN_2728634 128.6865 0
ILMN_3040515 3.166024 0.2556391
ILMN_2711608 141.7242 0
ILMN_1232875 1.033847 0.3107769
ILMN_1258507 -4.602973 0.4799499
ILMN_2746142 -0.6707098 0.3621554
ILMN_1252690 45.96092 0.007518797
ILMN_2655499 -7.292308 0.5626566
ILMN_1252870 16.08748 0.09273183
ILMN_1248179 -8.041365 0.5839599
ILMN_2649955 161.3849 0
ILMN_2628708 18.79112 0.07142857
ILMN_3024781 -10.23903 0.6779448
ILMN_2705628 9.745042 0.1578947

Total number of rows: 25697

Table truncated, full table size 716 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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