GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM63670

Query DataSets for GSM63670

Status

Public on Dec 21, 2005

Title

NG010_b

Sample type

RNA

Source name

nodose ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were collected in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of amplified RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-YEL002c/WBP1_at	1.556643e+01	A	0.340661
AFFX-YEL018w/_at	2.164968e+00	A	0.904333
AFFX-YEL024w/RIP1_at	6.390053e+00	A	0.382599
AFFX-YEL021w/URA3_at	1.072803e+01	A	0.108979
AFFX-MUR_b2_at	4.743624e+02	P	0.000046
AFFX-MURINE_b1_at	7.956448e+02	P	0.000652
AFFX-MURINE_B2_at	1.216210e+04	P	0.000030
AFFX-b-ActinMur/M12481_5_at	1.147167e+02	A	0.175328
AFFX-b-ActinMur/M12481_M_at	1.119464e+03	P	0.000044
AFFX-b-ActinMur/M12481_3_at	8.418921e+03	P	0.000044
AFFX-GapdhMur/M32599_5_at	6.021267e+01	P	0.021902
AFFX-GapdhMur/M32599_M_at	6.835277e+02	P	0.000169
AFFX-GapdhMur/M32599_3_at	6.970498e+03	P	0.000044
AFFX-TransRecMur/X57349_5_at	1.560287e+01	A	0.440646
AFFX-TransRecMur/X57349_M_at	2.377828e+01	A	0.340661
AFFX-TransRecMur/X57349_3_at	4.079231e+01	P	0.005565
AFFX-PyruCarbMur/L09192_5_at	9.715269e+01	A	0.216524
AFFX-PyruCarbMur/L09192_MA_at	4.695398e+01	A	0.300606
AFFX-PyruCarbMur/L09192_MB_at	1.252556e+01	A	0.712257
AFFX-PyruCarbMur/L09192_3_at	2.635501e+02	P	0.000446

Total number of rows: 12488

Table truncated, full table size 414 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |