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Sample GSM63674 Query DataSets for GSM63674
Status Public on Dec 21, 2005
Title NG014_b
Sample type RNA
 
Source name nodose ganglion
Organism Mus musculus
Characteristics BALB/c
Treatment protocol normal standard housing conditions
Extracted molecule total RNA
Extraction protocol approximately 150 Laser Capture Microdissected neurons were collected in RLT buffer.
Label biotin
Label protocol Approximately 12 microgram of amplified RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Laser captured visceral sensory neurons.
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jul 11, 2005
Last update date Dec 21, 2005
Contact name Pieter Johan Peeters
E-mail(s) ppeeter3@prdbe.jnj.com
Organization name J&J Pharmaceutical R&D
Department Internal Medicine
Street address Turnhoutseweg 30
City Beerse
ZIP/Postal code 2340
Country Belgium
 
Platform ID GPL81
Series (1)
GSE2917 Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-YEL002c/WBP1_at 1.791428e+01 A 0.425962
AFFX-YEL018w/_at 3.322369e+00 A 0.824672
AFFX-YEL024w/RIP1_at 1.376753e+01 A 0.067678
AFFX-YEL021w/URA3_at 2.263448e+01 M 0.058444
AFFX-MUR_b2_at 2.780752e+02 P 0.000071
AFFX-MURINE_b1_at 6.316410e+02 P 0.000829
AFFX-MURINE_B2_at 9.101440e+03 P 0.000030
AFFX-b-ActinMur/M12481_5_at 1.423076e+02 A 0.108979
AFFX-b-ActinMur/M12481_M_at 1.029724e+03 P 0.000044
AFFX-b-ActinMur/M12481_3_at 6.806438e+03 P 0.000044
AFFX-GapdhMur/M32599_5_at 5.189611e+01 P 0.018281
AFFX-GapdhMur/M32599_M_at 8.264352e+02 P 0.000095
AFFX-GapdhMur/M32599_3_at 6.348193e+03 P 0.000044
AFFX-TransRecMur/X57349_5_at 1.440123e+01 A 0.227636
AFFX-TransRecMur/X57349_M_at 2.471055e+00 A 0.999143
AFFX-TransRecMur/X57349_3_at 2.841976e+01 P 0.010317
AFFX-PyruCarbMur/L09192_5_at 6.919219e+01 A 0.156732
AFFX-PyruCarbMur/L09192_MA_at 2.444447e+01 A 0.411380
AFFX-PyruCarbMur/L09192_MB_at 8.199528e+00 A 0.749204
AFFX-PyruCarbMur/L09192_3_at 3.995216e+02 P 0.000195

Total number of rows: 12488

Table truncated, full table size 414 Kbytes.




Supplementary data files not provided

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