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Sample GSM63684 Query DataSets for GSM63684
Status Public on Dec 21, 2005
Title NG010_c
Sample type RNA
Source name nodose ganglion
Organism Mus musculus
Characteristics BALB/c
Treatment protocol normal standard housing conditions
Extracted molecule total RNA
Extraction protocol approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.
Label biotin
Label protocol Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Laser captured visceral sensory neurons.
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jul 11, 2005
Last update date Dec 21, 2005
Contact name Pieter Johan Peeters
Organization name J&J Pharmaceutical R&D
Department Internal Medicine
Street address Turnhoutseweg 30
City Beerse
ZIP/Postal code 2340
Country Belgium
Platform ID GPL1261
Series (1)
GSE2917 Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-MUR_b2_at 275.5322091 P 0.001480
AFFX-MURINE_b1_at 394.0505046 P 0.000451
AFFX-MURINE_B2_at 6202.9848012 P 0.000030
AFFX-b-ActinMur/M12481_5_at 63.3270427 M 0.058444
AFFX-b-ActinMur/M12481_M_at 587.8453832 P 0.000044
AFFX-b-ActinMur/M12481_3_at 4251.9112306 P 0.000044
AFFX-GapdhMur/M32599_5_at 26.5140113 M 0.058444
AFFX-GapdhMur/M32599_M_at 224.5939727 P 0.000147
AFFX-GapdhMur/M32599_3_at 3318.7760665 P 0.000044
AFFX-TransRecMur/X57349_5_at 11.7040122 A 0.300606
AFFX-TransRecMur/X57349_M_at 3.9572283 A 0.617401
AFFX-TransRecMur/X57349_3_at 22.3690255 A 0.062929
AFFX-PyruCarbMur/L09192_5_at 43.4546112 A 0.131361
AFFX-PyruCarbMur/L09192_MA_at 52.7391190 P 0.030976
AFFX-PyruCarbMur/L09192_MB_at 4.0928030 A 0.932322
AFFX-PyruCarbMur/L09192_3_at 187.0070273 P 0.000857
AFFX-18SRNAMur/X00686_5_at 519.3996490 P 0.000044
AFFX-18SRNAMur/X00686_M_at 717.2554537 P 0.000044
AFFX-18SRNAMur/X00686_3_at 417.0513651 P 0.000110
AFFX-DapX-5_at 5.8055087 A 0.275129

Total number of rows: 45101

Table truncated, full table size 1473 Kbytes.

Supplementary data files not provided

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