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Sample GSM63685 Query DataSets for GSM63685
Status Public on Dec 21, 2005
Title NG002_c
Sample type RNA
Source name nodose ganglion
Organism Mus musculus
Characteristics BALB/c
Treatment protocol normal standard housing conditions
Extracted molecule total RNA
Extraction protocol approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.
Label biotin
Label protocol Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Laser captured visceral sensory neurons.
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jul 11, 2005
Last update date Dec 21, 2005
Contact name Pieter Johan Peeters
Organization name J&J Pharmaceutical R&D
Department Internal Medicine
Street address Turnhoutseweg 30
City Beerse
ZIP/Postal code 2340
Country Belgium
Platform ID GPL1261
Series (1)
GSE2917 Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-MUR_b2_at 209.9350282 P 0.002307
AFFX-MURINE_b1_at 354.8401921 P 0.000829
AFFX-MURINE_B2_at 5514.7384872 P 0.000030
AFFX-b-ActinMur/M12481_5_at 73.1607141 P 0.028457
AFFX-b-ActinMur/M12481_M_at 438.8522862 P 0.000044
AFFX-b-ActinMur/M12481_3_at 3365.2717980 P 0.000044
AFFX-GapdhMur/M32599_5_at 47.3825917 P 0.006187
AFFX-GapdhMur/M32599_M_at 688.3365356 P 0.000052
AFFX-GapdhMur/M32599_3_at 4531.1039010 P 0.000044
AFFX-TransRecMur/X57349_5_at 7.7758846 A 0.455413
AFFX-TransRecMur/X57349_M_at 2.3167101 A 0.904333
AFFX-TransRecMur/X57349_3_at 24.3745448 P 0.021902
AFFX-PyruCarbMur/L09192_5_at 36.7485280 A 0.116113
AFFX-PyruCarbMur/L09192_MA_at 58.2141993 M 0.042962
AFFX-PyruCarbMur/L09192_MB_at 4.3647267 A 0.843268
AFFX-PyruCarbMur/L09192_3_at 297.3560137 P 0.000169
AFFX-18SRNAMur/X00686_5_at 269.6154814 P 0.000044
AFFX-18SRNAMur/X00686_M_at 721.4484752 P 0.000044
AFFX-18SRNAMur/X00686_3_at 281.7516544 P 0.000195
AFFX-DapX-5_at 11.6528010 M 0.046482

Total number of rows: 45101

Table truncated, full table size 1473 Kbytes.

Supplementary data files not provided

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