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Sample GSM63686 Query DataSets for GSM63686
Status Public on Dec 21, 2005
Title NG003_c
Sample type RNA
 
Source name nodose ganglion
Organism Mus musculus
Characteristics BALB/c
Treatment protocol normal standard housing conditions
Extracted molecule total RNA
Extraction protocol approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.
Label biotin
Label protocol Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Laser captured visceral sensory neurons.
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jul 11, 2005
Last update date Dec 21, 2005
Contact name Pieter Johan Peeters
E-mail(s) ppeeter3@prdbe.jnj.com
Organization name J&J Pharmaceutical R&D
Department Internal Medicine
Street address Turnhoutseweg 30
City Beerse
ZIP/Postal code 2340
Country Belgium
 
Platform ID GPL1261
Series (1)
GSE2917 Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MUR_b2_at 241.6394931 P 0.000933
AFFX-MURINE_b1_at 635.7283376 P 0.000511
AFFX-MURINE_B2_at 6084.0323736 P 0.000030
AFFX-b-ActinMur/M12481_5_at 59.5181126 A 0.116113
AFFX-b-ActinMur/M12481_M_at 402.9147222 P 0.000044
AFFX-b-ActinMur/M12481_3_at 3802.7688218 P 0.000044
AFFX-GapdhMur/M32599_5_at 45.2895321 P 0.008440
AFFX-GapdhMur/M32599_M_at 436.8553995 P 0.000070
AFFX-GapdhMur/M32599_3_at 4407.2237516 P 0.000044
AFFX-TransRecMur/X57349_5_at 4.6127247 A 0.485110
AFFX-TransRecMur/X57349_M_at 2.5113604 A 0.824672
AFFX-TransRecMur/X57349_3_at 26.0677967 P 0.036557
AFFX-PyruCarbMur/L09192_5_at 50.1962557 A 0.089478
AFFX-PyruCarbMur/L09192_MA_at 59.8101067 P 0.033677
AFFX-PyruCarbMur/L09192_MB_at 4.1323401 A 0.921998
AFFX-PyruCarbMur/L09192_3_at 268.7974018 P 0.000127
AFFX-18SRNAMur/X00686_5_at 635.1655403 P 0.000446
AFFX-18SRNAMur/X00686_M_at 1220.6992169 P 0.000044
AFFX-18SRNAMur/X00686_3_at 464.5697941 P 0.000070
AFFX-DapX-5_at 11.2801124 A 0.147918

Total number of rows: 45101

Table truncated, full table size 1473 Kbytes.




Supplementary data files not provided

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