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Sample GSM63688 Query DataSets for GSM63688
Status Public on Dec 21, 2005
Title NG013_c
Sample type RNA
Source name nodose ganglion
Organism Mus musculus
Characteristics BALB/c
Treatment protocol normal standard housing conditions
Extracted molecule total RNA
Extraction protocol approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.
Label biotin
Label protocol Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Laser captured visceral sensory neurons.
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jul 11, 2005
Last update date Dec 21, 2005
Contact name Pieter Johan Peeters
Organization name J&J Pharmaceutical R&D
Department Internal Medicine
Street address Turnhoutseweg 30
City Beerse
ZIP/Postal code 2340
Country Belgium
Platform ID GPL1261
Series (1)
GSE2917 Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-MUR_b2_at 232.9118813 P 0.003919
AFFX-MURINE_b1_at 322.8684552 P 0.001321
AFFX-MURINE_B2_at 6745.4382914 P 0.000030
AFFX-b-ActinMur/M12481_5_at 77.7111042 A 0.095667
AFFX-b-ActinMur/M12481_M_at 487.8229702 P 0.000044
AFFX-b-ActinMur/M12481_3_at 3218.1248736 P 0.000044
AFFX-GapdhMur/M32599_5_at 58.2920873 P 0.000581
AFFX-GapdhMur/M32599_M_at 632.0852549 P 0.000095
AFFX-GapdhMur/M32599_3_at 4960.6643071 P 0.000044
AFFX-TransRecMur/X57349_5_at 9.0388582 A 0.485110
AFFX-TransRecMur/X57349_M_at 3.2752240 A 0.949771
AFFX-TransRecMur/X57349_3_at 29.2943806 P 0.006187
AFFX-PyruCarbMur/L09192_5_at 57.6961998 A 0.156732
AFFX-PyruCarbMur/L09192_MA_at 59.4356807 A 0.067678
AFFX-PyruCarbMur/L09192_MB_at 6.6388134 A 0.891021
AFFX-PyruCarbMur/L09192_3_at 353.7087753 P 0.000225
AFFX-18SRNAMur/X00686_5_at 154.4610504 P 0.000127
AFFX-18SRNAMur/X00686_M_at 633.3825835 P 0.000052
AFFX-18SRNAMur/X00686_3_at 442.1097160 P 0.000147
AFFX-DapX-5_at 2.7780381 A 0.382599

Total number of rows: 45101

Table truncated, full table size 1478 Kbytes.

Supplementary data files not provided

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