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Sample GSM63689 Query DataSets for GSM63689
Status Public on Dec 21, 2005
Title NG005_c
Sample type RNA
Source name nodose ganglion
Organism Mus musculus
Characteristics BALB/c
Treatment protocol normal standard housing conditions
Extracted molecule total RNA
Extraction protocol approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.
Label biotin
Label protocol Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Laser captured visceral sensory neurons.
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jul 11, 2005
Last update date Dec 21, 2005
Contact name Pieter Johan Peeters
Organization name J&J Pharmaceutical R&D
Department Internal Medicine
Street address Turnhoutseweg 30
City Beerse
ZIP/Postal code 2340
Country Belgium
Platform ID GPL1261
Series (1)
GSE2917 Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-MUR_b2_at 206.8297004 P 0.001852
AFFX-MURINE_b1_at 239.3327465 P 0.000829
AFFX-MURINE_B2_at 4938.1767238 P 0.000030
AFFX-b-ActinMur/M12481_5_at 52.6501363 A 0.108979
AFFX-b-ActinMur/M12481_M_at 247.1610027 P 0.000052
AFFX-b-ActinMur/M12481_3_at 2612.3001598 P 0.000044
AFFX-GapdhMur/M32599_5_at 46.0717254 P 0.026111
AFFX-GapdhMur/M32599_M_at 352.9666492 P 0.000147
AFFX-GapdhMur/M32599_3_at 3991.8904441 P 0.000044
AFFX-TransRecMur/X57349_5_at 1.8862424 A 0.712257
AFFX-TransRecMur/X57349_M_at 9.7319132 A 0.588620
AFFX-TransRecMur/X57349_3_at 16.3569311 P 0.039648
AFFX-PyruCarbMur/L09192_5_at 43.7790323 A 0.095667
AFFX-PyruCarbMur/L09192_MA_at 39.9421151 P 0.039661
AFFX-PyruCarbMur/L09192_MB_at 5.1523866 A 0.868639
AFFX-PyruCarbMur/L09192_3_at 255.3434342 P 0.000195
AFFX-18SRNAMur/X00686_5_at 196.1656833 P 0.000110
AFFX-18SRNAMur/X00686_M_at 497.3016202 P 0.000052
AFFX-18SRNAMur/X00686_3_at 388.3585242 P 0.000095
AFFX-DapX-5_at 10.9266512 A 0.131361

Total number of rows: 45101

Table truncated, full table size 1471 Kbytes.

Supplementary data files not provided

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