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Sample GSM63689

Query DataSets for GSM63689

Status

Public on Dec 21, 2005

Title

NG005_c

Sample type

RNA

Source name

nodose ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MUR_b2_at	206.8297004	P	0.001852
AFFX-MURINE_b1_at	239.3327465	P	0.000829
AFFX-MURINE_B2_at	4938.1767238	P	0.000030
AFFX-b-ActinMur/M12481_5_at	52.6501363	A	0.108979
AFFX-b-ActinMur/M12481_M_at	247.1610027	P	0.000052
AFFX-b-ActinMur/M12481_3_at	2612.3001598	P	0.000044
AFFX-GapdhMur/M32599_5_at	46.0717254	P	0.026111
AFFX-GapdhMur/M32599_M_at	352.9666492	P	0.000147
AFFX-GapdhMur/M32599_3_at	3991.8904441	P	0.000044
AFFX-TransRecMur/X57349_5_at	1.8862424	A	0.712257
AFFX-TransRecMur/X57349_M_at	9.7319132	A	0.588620
AFFX-TransRecMur/X57349_3_at	16.3569311	P	0.039648
AFFX-PyruCarbMur/L09192_5_at	43.7790323	A	0.095667
AFFX-PyruCarbMur/L09192_MA_at	39.9421151	P	0.039661
AFFX-PyruCarbMur/L09192_MB_at	5.1523866	A	0.868639
AFFX-PyruCarbMur/L09192_3_at	255.3434342	P	0.000195
AFFX-18SRNAMur/X00686_5_at	196.1656833	P	0.000110
AFFX-18SRNAMur/X00686_M_at	497.3016202	P	0.000052
AFFX-18SRNAMur/X00686_3_at	388.3585242	P	0.000095
AFFX-DapX-5_at	10.9266512	A	0.131361

Total number of rows: 45101

Table truncated, full table size 1471 Kbytes.

Supplementary data files not provided

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