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Sample GSM63831 Query DataSets for GSM63831
Status Public on Dec 10, 2017
Title Regenerating_MM13
Sample type RNA
 
Source name Laser captured spinal cord neurons
Organism Rattus norvegicus
Characteristics Fischer 344, adult female
Biomaterial provider Lawrence Moon
Treatment protocol Cut 10um transverse cryosections of unfixed spinal cord, dehydrate, laser capture
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol PicoPure (version C), Arcturus
Label Biotin
Label protocol Three round Eberwine amplification, proprietary modified Message Amp using BioArray High Yield labeling kit (Enzo) in last round.
 
Hybridization protocol Standard Affymetrix procedure for fragmentation and hybridization
Scan protocol Standard GCOS scanning, GeneChip Scanner 3000
Description Identification of genes associated with axotomy or regeneration in the CNS.
Data processing GCOS, scaled to 200
 
Submission date Jul 12, 2005
Last update date Dec 10, 2017
Contact name Lawrence DF Moon
E-mail(s) lawrence.moon@kcl.ac.uk
Organization name King's College London
Department Wolfson Centre for Age-Related Diseases
Lab Moon team
Street address 16 - 18 Newcomen Street
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL1355
Series (1)
GSE2925 Identification of genes expressed by spinal cord neurons after axotomy and during axon regeneration

Data table header descriptions
ID_REF
VALUE as for GSM63822
ABS_CALL as for GSM63822
DETECTION P-VALUE as for GSM63822

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 58.6 P 0.004998
AFFX-BioB-M_at 95.6 P 0.000095
AFFX-BioB-3_at 95.6 P 0.001102
AFFX-BioC-5_at 358.9 P 0.00006
AFFX-BioC-3_at 237 P 0.000044
AFFX-BioDn-5_at 631.6 P 0.000044
AFFX-BioDn-3_at 1739.7 P 0.000044
AFFX-CreX-5_at 3054.7 P 0.000044
AFFX-CreX-3_at 3240.9 P 0.000044
AFFX-DapX-5_at 192.8 P 0.000095
AFFX-DapX-M_at 365.1 P 0.000081
AFFX-DapX-3_at 432.9 P 0.00007
AFFX-LysX-5_at 214.3 P 0.00011
AFFX-LysX-M_at 304.8 P 0.000052
AFFX-LysX-3_at 314.8 P 0.000044
AFFX-PheX-5_at 357.2 P 0.000052
AFFX-PheX-M_at 410.7 P 0.000044
AFFX-PheX-3_at 396 P 0.000044
AFFX-ThrX-5_at 373.6 P 0.000081
AFFX-ThrX-M_at 373.6 P 0.000044

Total number of rows: 31099

Table truncated, full table size 818 Kbytes.




Supplementary file Size Download File type/resource
GSM63831.CEL.gz 4.6 Mb (ftp)(http) CEL

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