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Sample GSM63837 Query DataSets for GSM63837
Status Public on Dec 10, 2017
Title Regenerating_MM16
Sample type RNA
 
Source name Laser captured spinal cord neurons
Organism Rattus norvegicus
Characteristics Adult female Fischer 344
Biomaterial provider Lawrence Moon
Treatment protocol Cut 10um transverse cryosections of unfixed spinal cord, dehydrate, laser capture
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol PicoPure (version C), Arcturus
Label Biotin
Label protocol Three round Eberwine amplification, proprietary modified Message Amp using BioArray High Yield labeling kit (Enzo) in last round.
 
Hybridization protocol Standard Affymetrix procedure for fragmentation and hybridization
Scan protocol Standard GCOS scanning, GeneChip Scanner 3000
Description Identification of genes associated with axotomy or regeneration in the CNS.
Data processing GCOS, scaled to 200
 
Submission date Jul 12, 2005
Last update date Dec 10, 2017
Contact name Lawrence DF Moon
E-mail(s) lawrence.moon@kcl.ac.uk
Organization name King's College London
Department Wolfson Centre for Age-Related Diseases
Lab Moon team
Street address 16 - 18 Newcomen Street
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL1355
Series (1)
GSE2925 Identification of genes expressed by spinal cord neurons after axotomy and during axon regeneration

Data table header descriptions
ID_REF
VALUE as for GSM63822
ABS_CALL as for GSM63822
DETECTION P-VALUE as for GSM63822

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 62.7 P 0.006871
AFFX-BioB-M_at 71.9 P 0.000258
AFFX-BioB-3_at 69.8 P 0.011384
AFFX-BioC-5_at 285.5 P 0.00007
AFFX-BioC-3_at 228.5 P 0.00006
AFFX-BioDn-5_at 449.9 P 0.000044
AFFX-BioDn-3_at 1406 P 0.000044
AFFX-CreX-5_at 2560.2 P 0.000044
AFFX-CreX-3_at 2678.8 P 0.000044
AFFX-DapX-5_at 180 P 0.000147
AFFX-DapX-M_at 342.8 P 0.000127
AFFX-DapX-3_at 372.5 P 0.000081
AFFX-LysX-5_at 191.5 P 0.00006
AFFX-LysX-M_at 287.1 P 0.000081
AFFX-LysX-3_at 325.8 P 0.00006
AFFX-PheX-5_at 267.4 P 0.000081
AFFX-PheX-M_at 350.7 P 0.000052
AFFX-PheX-3_at 267.2 P 0.000044
AFFX-ThrX-5_at 269.7 P 0.000081
AFFX-ThrX-M_at 268.5 P 0.000052

Total number of rows: 31099

Table truncated, full table size 819 Kbytes.




Supplementary file Size Download File type/resource
GSM63837.CEL.gz 4.7 Mb (ftp)(http) CEL

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