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Sample GSM640439 Query DataSets for GSM640439
Status Public on Jan 19, 2012
Title CH06874_case_phenotype1_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.6153564462779 102.2552627 4.030552 0.4272727 17
ILMN_2055271 6.74351424907203 111.8929648 4.466746 0.1441558 24
ILMN_1736007 6.46492496890458 92.63566197 4.155861 0.9116883 23
ILMN_2383229 6.5457381266203 97.58730371 3.479566 0.8181818 26
ILMN_1806310 6.62793202678492 103.1523681 4.058258 0.4051948 24
ILMN_1779670 6.54658868970223 97.64499114 3.390322 0.7038961 18
ILMN_1653355 6.63922174086887 103.9685077 4.36138 0.448052 14
ILMN_1717783 6.3814487809185 87.55553415 2.685021 0.9961039 19
ILMN_1705025 6.48905088945898 94.08687993 3.138209 0.8805195 20
ILMN_1814316 6.49033896047755 94.14806768 2.835535 0.8805195 25
ILMN_2359168 6.48932876376035 94.09797729 2.911021 0.8545455 31
ILMN_1731507 6.65113951776994 104.8278537 9.233469 0.2857143 10
ILMN_1787689 6.57196179053526 99.33445056 3.53386 0.6961039 15
ILMN_3241953 7.23113919585575 164.1187546 8.321808 0.001298701 27
ILMN_1745607 6.57070090355757 99.26118446 3.29867 0.6636364 22
ILMN_2136495 6.47626422725313 93.30156924 5.022902 0.8623376 15
ILMN_1668111 6.55927208787681 98.47972555 3.526334 0.7038961 20
ILMN_2295559 6.74583993219025 112.0784933 7.973464 0.09220779 13
ILMN_1735045 6.47879742021431 93.43296142 3.570686 0.9142857 22
ILMN_1680754 6.7639344725854 113.6702401 6.004506 0.1285714 19

Total number of rows: 47231

Table truncated, full table size 2854 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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