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Sample GSM640443 Query DataSets for GSM640443
Status Public on Jan 19, 2012
Title CH35786_case_phenotype1_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.52493649113675 86.71844558 4.939581 0.7961039 18
ILMN_2055271 6.71096178603038 99.96469543 4.474649 0.1779221 28
ILMN_1736007 6.6813774337872 97.81074519 6.419539 0.3038961 16
ILMN_2383229 6.6881600205287 98.27731575 8.11164 0.2155844 16
ILMN_1806310 6.69565073010704 98.83541669 4.131001 0.2558441 20
ILMN_1779670 6.50651988194369 85.44947743 4.338823 0.8597403 22
ILMN_1653355 6.81942578755774 107.9375973 10.04723 0.05714286 13
ILMN_1717783 6.52629795765498 86.80520341 4.766429 0.7987013 26
ILMN_1705025 6.61899744430884 93.34950693 3.55896 0.4636364 31
ILMN_1814316 6.61864923833917 93.31913743 3.824965 0.4948052 32
ILMN_2359168 6.5361591909238 87.48994032 4.055657 0.7987013 22
ILMN_1731507 6.46711393148924 82.81406317 3.864077 0.9207792 17
ILMN_1787689 6.67406751501316 97.26673695 5.633856 0.2883117 26
ILMN_3241953 7.33632368813047 150.4876805 15.56621 0 10
ILMN_1745607 6.56901437684698 89.81903995 3.736833 0.635065 29
ILMN_2136495 6.56764930462388 89.7327322 4.061985 0.7194805 24
ILMN_1668111 6.7233652413094 100.8691936 7.335188 0.1935065 22
ILMN_2295559 6.66218830059778 96.42099988 8.035715 0.2883117 11
ILMN_1735045 6.48889271996404 84.31029197 4.808119 0.8623376 19
ILMN_1680754 6.9695691208717 118.7340209 11.11464 0.01038961 17

Total number of rows: 47231

Table truncated, full table size 2841 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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