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Sample GSM640444 Query DataSets for GSM640444
Status Public on Jan 19, 2012
Title CH20147_case_phenotype1_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.69276321355194 109.25834 5.728644 0.1714286 22
ILMN_2055271 6.77853437496475 115.63508 4.560057 0.1012987 18
ILMN_1736007 6.63992709002982 105.49769 4.670768 0.3025974 20
ILMN_2383229 6.62675796014155 104.57944 3.820749 0.4623377 26
ILMN_1806310 6.671771058726 107.74161 6.256138 0.2519481 16
ILMN_1779670 6.62529409972176 104.48835 4.172698 0.3532467 18
ILMN_1653355 6.4783158046441 94.9625 4.754091 0.9545454 12
ILMN_1717783 6.52099573813102 97.67978 3.150486 0.7545455 22
ILMN_1705025 6.54576369569717 99.24926 3.032916 0.6766234 26
ILMN_1814316 6.53040053462452 98.24759 2.792537 0.7649351 32
ILMN_2359168 6.4766482102535 94.83493 2.774155 0.8753247 26
ILMN_1731507 6.54076588121978 98.92169 3.807092 0.6779221 14
ILMN_1787689 6.66518438787133 107.28996 3.612651 0.3025974 25
ILMN_3241953 6.96345160596526 131.13966 4.423866 0.01688312 23
ILMN_1745607 6.61201864343823 103.57673 3.708367 0.4623377 24
ILMN_2136495 6.45728917542401 93.62399 5.980102 0.9 13
ILMN_1668111 6.38244557696458 89.40652 3.975563 0.9896104 19
ILMN_2295559 6.41409408924859 91.07853 2.942007 0.987013 16
ILMN_1735045 6.58418485678124 101.74174 3.400532 0.5766234 25
ILMN_1680754 6.83147810452093 119.85336 7.860615 0.05324675 20

Total number of rows: 47231

Table truncated, full table size 2760 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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