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Sample GSM640451 Query DataSets for GSM640451
Status Public on Jan 19, 2012
Title CH33742_control_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.66021556909107 94.08946 3.572326 0.2558441 26
ILMN_2055271 6.69869654321121 96.46447 3.338603 0.2766234 28
ILMN_1736007 6.77971745518336 101.70532 5.677503 0.04805195 24
ILMN_2383229 6.61295408979347 91.36798 3.232641 0.5337662 13
ILMN_1806310 6.70622521147878 96.91823 6.268768 0.1506494 17
ILMN_1779670 6.64506698417365 93.2208 3.488742 0.2818182 26
ILMN_1653355 6.50562494307925 85.50904 3.227693 0.9402598 16
ILMN_1717783 6.5806735052429 89.5548 3.541547 0.5207792 23
ILMN_1705025 6.6404222235099 92.95658 3.570074 0.3246753 21
ILMN_1814316 6.70407384292774 96.80591 4.577321 0.1506494 32
ILMN_2359168 6.54830788030636 87.75968 3.728504 0.6402597 35
ILMN_1731507 6.54146380944711 87.41278 3.52725 0.6961039 14
ILMN_1787689 6.72985331647414 98.38314 3.846478 0.125974 32
ILMN_3241953 7.33434773762518 150.14584 6.239698 0 30
ILMN_1745607 6.53224809316017 86.92338 3.954708 0.7883117 16
ILMN_2136495 6.53773491156972 87.22046 4.562131 0.6532468 22
ILMN_1668111 6.65423546789484 93.73809 5.164121 0.2961039 18
ILMN_2295559 6.64504363049013 93.21975 3.609646 0.3857143 11
ILMN_1735045 6.51172967228238 85.81557 2.828085 0.8428571 20
ILMN_1680754 6.94948982474722 114.41816 7.726489 0.01038961 16

Total number of rows: 47231

Table truncated, full table size 2719 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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