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Sample GSM642960 Query DataSets for GSM642960
Status Public on Nov 01, 2011
Title Ovarian carcinoma 28
Sample type RNA
 
Source name Ovarian carcinoma 28
Organism Homo sapiens
Characteristics histological type: Serous
grade: 3
Stage: IIIc
tissue: ovarian carcinoma tumor
os event: 1
os time (years): 1.90007
pfs event: 1
pfs time (years): 1.52225
signature: FIBROSIS
Extracted molecule total RNA
Extraction protocol Total RNA purification was conducted using miRNeasy kit
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2,0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Gene expression data from ovarian carcinoma
Data processing The data were analyzed with Partek software (6.10.0915 version)
 
Submission date Dec 20, 2010
Last update date Aug 19, 2014
Contact name Fatima Mechta-Grigoriou
E-mail(s) fatima.mechta-grigoriou@curie.fr
Phone +33156246653
Fax +33156246650
Organization name Institut Curie
Department INSERM U830
Lab "Stress and Cancer" Lab.
Street address 26 rue d'Ulm
City PARIS
ZIP/Postal code 75248
Country France
 
Platform ID GPL570
Series (1)
GSE26193 Control of oxidative stress by miRNA and impact on ovarian tumorigenesis

Data table header descriptions
ID_REF
VALUE GC-RMA signal intensities

Data table
ID_REF VALUE
1007_s_at 9.05936
1053_at 6.67341
117_at 4.17189
121_at 9.08069
1255_g_at 2.47504
1294_at 5.89247
1316_at 4.06593
1320_at 2.34709
1405_i_at 4.19005
1431_at 2.67313
1438_at 2.79204
1487_at 5.88045
1494_f_at 2.72621
1552256_a_at 8.32432
1552257_a_at 6.1316
1552258_at 2.70341
1552261_at 5.5245
1552263_at 6.00967
1552264_a_at 7.23515
1552266_at 3.17541

Total number of rows: 54675

Table truncated, full table size 998 Kbytes.




Supplementary file Size Download File type/resource
GSM642960_OC01_ARN0039_s1h1s1_U133p2.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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