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Sample GSM6440129 Query DataSets for GSM6440129
Status Public on Sep 19, 2022
Title SnRNAseq of striatum from SPF mice post exercise replicate 1
Sample type SRA
 
Source name Striatum
Organism Mus musculus
Characteristics tissue: Striatum
genotype: C57BL/6
treatment: Post exercise without antibiotics treatment
Extracted molecule polyA RNA
Extraction protocol Nuclei were isolated as described in manuscript, sorted based on DAPI positivity, and loaded into 10X Genomics platform
10X Genomics according to manufacturers protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model NextSeq 550
 
Data processing Cellranger v3
Supplementary files format and content: mm10
Supplementary files format and content: matrix, barcodes, and gene files
 
Submission date Aug 10, 2022
Last update date Sep 21, 2022
Contact name Patrick Lundgren
E-mail(s) r.patricklundgren@gmail.com
Organization name University of Pennsylvania
Street address 302 Johnson Pavilion, 3610 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL21626
Series (1)
GSE210906 A microbiome-dependent gut–brain pathway regulates motivation for exercise
Relations
BioSample SAMN30237318
SRA SRX17019984

Supplementary file Size Download File type/resource
GSM6440129_Post_Exercise_SPF1_barcodes.tsv.gz 20.5 Kb (ftp)(http) TSV
GSM6440129_Post_Exercise_SPF1_features.tsv.gz 244.7 Kb (ftp)(http) TSV
GSM6440129_Post_Exercise_SPF1_matrix.mtx.gz 19.5 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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