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Status |
Public on Apr 08, 2011 |
Title |
miR-143DOX hepatocytes, biological rep1 |
Sample type |
RNA |
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Source name |
hepatocytes isolated from doxycycline-treated miR-143 transgenic mice
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Organism |
Mus musculus |
Characteristics |
strain/background: C57BL/6 developmental stage: adult tissue: primary hepatocytes genotype: transgenic for doxycycline-inducible miR-143 allele treatment: doxycycline in drinking water treatment duration: 8 days
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Treatment protocol |
Hepatocytes were isolated after liver perfusion with EBSS, 0.5mM EGTA and EBSS, 10mM Hepes, collagenase, trypsin inhibitor, snap-frozen and stored at -80°C until RNA extraction.
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Growth protocol |
Adult mice were treated with drinking water containing 4mg/ml doxycycline/ 10% sucrose for 8 days to induce miR-143 overexpression in miR-143DOX mice.
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
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Label |
biotin
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Label protocol |
Biotinylated cDNAs were prepared according to the GeneChip Whole Transcript Sense Target Labeling protocol (Affymetrix).
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Hybridization protocol |
Following fragmentation, cDNAs were hybridized for 17 hr at 45°C on Affymetrix Mouse Gene 1.0 ST Arrays. GeneChips were washed and stained in the GeneChip Fluidics Station 450 (Affymetrix).
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Scan protocol |
GeneChips were scanned using the GeneChip Scanner 3000 7G (Affymetrix).
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Description |
CBE_WUN2_260_TG Gene expression data from isolated mouse hepatocytes.
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Data processing |
The data were analyzed with Partek Genomics Suite using Affymetrix default analysis settings and quantile normalization. Full exons were included in the analysis.
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Submission date |
Jan 05, 2011 |
Last update date |
Apr 08, 2011 |
Contact name |
Jens Claus Bruening |
Organization name |
Institute for Genetics, University of Cologne
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Department |
Mouse Genetics and Metabolism
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Lab |
AG Bruening
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Street address |
Zuelpicher Str.47
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City |
Cologne |
ZIP/Postal code |
50674 |
Country |
Germany |
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Platform ID |
GPL10740 |
Series (1) |
GSE26460 |
Expression data from primary hepatocytes isolated from miR-143DOX mice |
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