|
| Status |
Public on Apr 08, 2011 |
| Title |
control hepatocytes, biological rep1 |
| Sample type |
RNA |
| |
|
| Source name |
hepatocytes isolated from doxycycline-treated control mice
|
| Organism |
Mus musculus |
| Characteristics |
strain/background: C57BL/6
developmental stage: adult
tissue: primary hepatocytes
genotype: wildtype
treatment: doxycycline in drinking water
treatment duration: 8 days
|
| Treatment protocol |
Hepatocytes were isolated after liver perfusion with EBSS, 0.5mM EGTA and EBSS, 10mM Hepes, collagenase, trypsin inhibitor, snap-frozen and stored at -80°C until RNA extraction.
|
| Growth protocol |
Adult mice were treated with drinking water containing 4mg/ml doxycycline/ 10% sucrose for 8 days to induce miR-143 overexpression in miR-143DOX mice.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cDNAs were prepared according to the GeneChip Whole Transcript Sense Target Labeling protocol (Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, cDNAs were hybridized for 17 hr at 45°C on Affymetrix Mouse Gene 1.0 ST Arrays. GeneChips were washed and stained in the GeneChip Fluidics Station 450 (Affymetrix).
|
| Scan protocol |
GeneChips were scanned using the GeneChip Scanner 3000 7G (Affymetrix).
|
| Description |
CBE_WUN2_261_WT
Wildtype littermate control.
Gene expression data from isolated mouse hepatocytes.
|
| Data processing |
The data were analyzed with Partek Genomics Suite using Affymetrix default analysis settings and quantile normalization. Full exons were included in the analysis.
|
| |
|
| Submission date |
Jan 05, 2011 |
| Last update date |
Apr 08, 2011 |
| Contact name |
Jens Claus Bruening |
| Organization name |
Institute for Genetics, University of Cologne
|
| Department |
Mouse Genetics and Metabolism
|
| Lab |
AG Bruening
|
| Street address |
Zuelpicher Str.47
|
| City |
Cologne |
| ZIP/Postal code |
50674 |
| Country |
Germany |
| |
|
| Platform ID |
GPL10740 |
| Series (1) |
| GSE26460 |
Expression data from primary hepatocytes isolated from miR-143DOX mice |
|
