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Sample GSM651443 Query DataSets for GSM651443
Status Public on Mar 15, 2011
Title AKR_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: AKR
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
AKR_hippo_pval

Data table
ID_REF VALUE AKR_hippo_pval
ILMN_1248788 180.2345 0.04636591
ILMN_2707227 177.0485 0.05764411
ILMN_2896528 5951.99 0
ILMN_2721178 1548.205 0
ILMN_1227723 424.5479 0
ILMN_3033922 1699.2 0
ILMN_3092673 5775.946 0
ILMN_2730714 4458.506 0
ILMN_3162224 2663.136 0
ILMN_2816356 170.9542 0.09774436
ILMN_2808939 1512.07 0
ILMN_2634564 720.0004 0
ILMN_1216623 877.0817 0
ILMN_1215157 1085.738 0
ILMN_1228777 162.1928 0.1616541
ILMN_2737647 176.6305 0.06015038
ILMN_1216425 150.3892 0.3521303
ILMN_2734484 942.905 0
ILMN_2652961 145.1214 0.4924812
ILMN_2952292 211.8434 0.005012531

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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