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Sample GSM651447 Query DataSets for GSM651447
Status Public on Mar 15, 2011
Title AXB13/PgnJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: AXB13/PgnJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
AXB13/PgnJ_hippo_pval

Data table
ID_REF VALUE AXB13/PgnJ_hippo_pval
ILMN_1248788 142.1049 0.2744361
ILMN_2707227 153.1633 0.1365915
ILMN_2896528 5045.699 0
ILMN_2721178 1279.318 0
ILMN_1227723 396.5022 0
ILMN_3033922 2103.661 0
ILMN_3092673 5643.071 0
ILMN_2730714 4267.761 0
ILMN_3162224 2326.561 0
ILMN_2816356 189.979 0.01503759
ILMN_2808939 1254.312 0
ILMN_2634564 771.3524 0
ILMN_1216623 795.4236 0
ILMN_1215157 976.3266 0
ILMN_1228777 131.836 0.4974937
ILMN_2737647 152.3658 0.1428571
ILMN_1216425 137.06 0.3709273
ILMN_2734484 798.3296 0
ILMN_2652961 117.3612 0.9185464
ILMN_2952292 206.7539 0.007518797

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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