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Sample GSM651451 Query DataSets for GSM651451
Status Public on Mar 15, 2011
Title AXB19b/PgnJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: AXB19b/PgnJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
AXB19b/PgnJ_hippo_pval

Data table
ID_REF VALUE AXB19b/PgnJ_hippo_pval
ILMN_1248788 227.932 0.5100251
ILMN_2707227 349.3438 0.07894737
ILMN_2896528 2527.072 0
ILMN_2721178 198.0543 0.6553885
ILMN_1227723 1036.28 0
ILMN_3033922 213.6422 0.5714286
ILMN_3092673 8255.262 0
ILMN_2730714 1108.684 0
ILMN_3162224 331.3721 0.1090226
ILMN_2816356 233.5103 0.4824561
ILMN_2808939 627.6948 0
ILMN_2634564 5352.27 0
ILMN_1216623 4687.48 0
ILMN_1215157 6639.781 0
ILMN_1228777 270.3194 0.2944862
ILMN_2737647 73.53442 0.9849624
ILMN_1216425 200.0768 0.6403509
ILMN_2734484 230.1566 0.5012531
ILMN_2652961 99.79146 0.9573935
ILMN_2952292 617.8859 0

Total number of rows: 25697

Table truncated, full table size 760 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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